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  5. AT1G01980

AT1G01980


Description : FAD-binding Berberine family protein


Gene families : OG0000307 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000307_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G01980
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00162870 evm_27.TU.AmTr_v1... Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.02 OrthoFinder output from all 47 species
AT1G30700 No alias FAD-binding Berberine family protein 0.04 OrthoFinder output from all 47 species
AT5G44360 No alias FAD-binding Berberine family protein 0.03 OrthoFinder output from all 47 species
Adi_g040975 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.04 OrthoFinder output from all 47 species
Aev_g39909 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.04 OrthoFinder output from all 47 species
Dac_g18868 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Dac_g37250 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.02 OrthoFinder output from all 47 species
Gb_24403 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 OrthoFinder output from all 47 species
Gb_24416 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 OrthoFinder output from all 47 species
LOC_Os02g14090.1 LOC_Os02g14090 Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.06 OrthoFinder output from all 47 species
LOC_Os06g35590.1 LOC_Os06g35590 Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.02 OrthoFinder output from all 47 species
LOC_Os06g35700.1 LOC_Os06g35700 Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.02 OrthoFinder output from all 47 species
MA_10144220g0010 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.02 OrthoFinder output from all 47 species
MA_10427412g0010 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.04 OrthoFinder output from all 47 species
MA_162773g0010 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 OrthoFinder output from all 47 species
MA_186285g0010 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 OrthoFinder output from all 47 species
MA_260168g0010 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 OrthoFinder output from all 47 species
MA_26891g0010 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.02 OrthoFinder output from all 47 species
MA_5468901g0010 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.04 OrthoFinder output from all 47 species
MA_613919g0010 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 OrthoFinder output from all 47 species
Msp_g44295 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.02 OrthoFinder output from all 47 species
Nbi_g21792 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.02 OrthoFinder output from all 47 species
Ore_g30059 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.04 OrthoFinder output from all 47 species
Ore_g38677 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.02 OrthoFinder output from all 47 species
Ore_g42757 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g42813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g022860.1.1 Solyc02g022860 Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 OrthoFinder output from all 47 species
Solyc02g070070.1.1 Solyc02g070070 Berberine bridge enzyme-like 13 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc06g065070.1.1 Solyc06g065070 Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 OrthoFinder output from all 47 species
Zm00001e021718_P001 Zm00001e021718 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e037259_P001 Zm00001e037259 Enzyme classification.EC_1 oxidoreductases.EC_1.1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005794 Golgi apparatus IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
MF GO:0009055 electron transfer activity ISS Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0002238 response to molecule of fungal origin IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005199 structural constituent of cell wall IEP HCCA
MF GO:0005351 carbohydrate:proton symporter activity IEP HCCA
MF GO:0005402 carbohydrate:monoatomic cation symporter activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006071 glycerol metabolic process IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008889 glycerophosphodiester phosphodiesterase activity IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009826 unidimensional cell growth IEP HCCA
BP GO:0009827 plant-type cell wall modification IEP HCCA
BP GO:0009832 plant-type cell wall biogenesis IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0009860 pollen tube growth IEP HCCA
BP GO:0009932 cell tip growth IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010093 specification of floral organ identity IEP HCCA
MF GO:0015144 carbohydrate transmembrane transporter activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015293 symporter activity IEP HCCA
MF GO:0015294 solute:monoatomic cation symporter activity IEP HCCA
MF GO:0015295 solute:proton symporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016049 cell growth IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0019400 alditol metabolic process IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0048440 carpel development IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090701 specification of plant organ identity IEP HCCA
InterPro domains Description Start Stop
IPR012951 BBE 476 532
IPR006094 Oxid_FAD_bind_N 80 221
No external refs found!