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  5. AT1G01680

AT1G01680 (ATPUB54, PUB54)


Aliases : ATPUB54, PUB54

Description : plant U-box 54


Gene families : OG0000332 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000332_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G01680
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00268730 evm_27.TU.AmTr_v1... Protein modification.phosphorylation.TKL kinase... 0.03 OrthoFinder output from all 47 species
AT1G01670 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT2G45920 No alias U-box domain-containing protein 0.04 OrthoFinder output from all 47 species
AT5G57035 No alias U-box domain-containing protein kinase family protein 0.04 OrthoFinder output from all 47 species
AT5G61560 No alias U-box domain-containing protein kinase family protein 0.04 OrthoFinder output from all 47 species
Aob_g23065 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Aop_g16537 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Aop_g68034 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Ceric.15G026000.1 Ceric.15G026000 not classified & original description: pacid=50640286... 0.04 OrthoFinder output from all 47 species
Cre12.g532050 No alias Protein modification.phosphorylation.TKL kinase... 0.02 OrthoFinder output from all 47 species
Dde_g16373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29731 No alias EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
GSVIVT01014020001 No alias Protein modification.phosphorylation.TKL kinase... 0.06 OrthoFinder output from all 47 species
GSVIVT01015162001 No alias Protein modification.phosphorylation.TKL kinase... 0.05 OrthoFinder output from all 47 species
GSVIVT01024979001 No alias Protein modification.phosphorylation.TKL kinase... 0.04 OrthoFinder output from all 47 species
GSVIVT01026936001 No alias Protein modification.phosphorylation.TKL kinase... 0.03 OrthoFinder output from all 47 species
GSVIVT01032261001 No alias Protein modification.phosphorylation.TKL kinase... 0.03 OrthoFinder output from all 47 species
Gb_34012 No alias receptor-like protein kinase (RLCK-IXb) 0.03 OrthoFinder output from all 47 species
LOC_Os09g39620.1 LOC_Os09g39620 receptor-like protein kinase (RLCK-IXb) 0.05 OrthoFinder output from all 47 species
LOC_Os09g39650.2 LOC_Os09g39650 U-box domain-containing protein 33 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os10g40490.1 LOC_Os10g40490 U-box domain-containing protein 36 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g27861 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_15203g0010 No alias receptor-like protein kinase (RLCK-IXb) 0.03 OrthoFinder output from all 47 species
MA_16444g0010 No alias receptor-like protein kinase (RLCK-IXb) 0.04 OrthoFinder output from all 47 species
MA_177789g0020 No alias U-box domain-containing protein 52 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_22360g0010 No alias receptor-like protein kinase (RLCK-IXb) 0.04 OrthoFinder output from all 47 species
Msp_g32249 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Ore_g29631 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Pir_g60217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10249 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sam_g26123 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Smo138945 No alias Protein modification.phosphorylation.TKL kinase... 0.03 OrthoFinder output from all 47 species
Solyc03g025450.4.1 Solyc03g025450 receptor-like protein kinase (RLCK-IXb) 0.05 OrthoFinder output from all 47 species
Solyc05g051610.3.1 Solyc05g051610 receptor-like protein kinase (RLCK-IXb) 0.02 OrthoFinder output from all 47 species
Tin_g20080 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Zm00001e002287_P001 Zm00001e002287 U-box domain-containing protein 36 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e023191_P001 Zm00001e023191 receptor-like protein kinase (RLCK-IXb) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000165 MAPK cascade IEP HCCA
BP GO:0001666 response to hypoxia IEP HCCA
BP GO:0002213 defense response to insect IEP HCCA
BP GO:0002252 immune effector process IEP HCCA
BP GO:0002376 immune system process IEP HCCA
BP GO:0002679 respiratory burst involved in defense response IEP HCCA
BP GO:0002682 regulation of immune system process IEP HCCA
BP GO:0002831 regulation of response to biotic stimulus IEP HCCA
MF GO:0004551 dinucleotide phosphatase activity IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0004806 triglyceride lipase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006733 obsolete oxidoreduction coenzyme metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006775 fat-soluble vitamin metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008909 isochorismate synthase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009106 lipoate metabolic process IEP HCCA
BP GO:0009108 obsolete coenzyme biosynthetic process IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009595 detection of biotic stimulus IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009617 response to bacterium IEP HCCA
BP GO:0009620 response to fungus IEP HCCA
BP GO:0009625 response to insect IEP HCCA
BP GO:0009626 plant-type hypersensitive response IEP HCCA
BP GO:0009627 systemic acquired resistance IEP HCCA
BP GO:0009696 salicylic acid metabolic process IEP HCCA
BP GO:0009697 salicylic acid biosynthetic process IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway IEP HCCA
BP GO:0009863 salicylic acid mediated signaling pathway IEP HCCA
BP GO:0009867 jasmonic acid mediated signaling pathway IEP HCCA
BP GO:0009967 positive regulation of signal transduction IEP HCCA
BP GO:0010118 stomatal movement IEP HCCA
BP GO:0010200 response to chitin IEP HCCA
BP GO:0010243 response to organonitrogen compound IEP HCCA
BP GO:0010310 regulation of hydrogen peroxide metabolic process IEP HCCA
BP GO:0010363 regulation of plant-type hypersensitive response IEP HCCA
BP GO:0010618 aerenchyma formation IEP HCCA
BP GO:0010647 positive regulation of cell communication IEP HCCA
BP GO:0010941 regulation of cell death IEP HCCA
BP GO:0010942 positive regulation of cell death IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0018958 phenol-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019825 oxygen binding IEP HCCA
BP GO:0023056 positive regulation of signaling IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031347 regulation of defense response IEP HCCA
BP GO:0031348 negative regulation of defense response IEP HCCA
BP GO:0032101 regulation of response to external stimulus IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034050 programmed cell death induced by symbiont IEP HCCA
BP GO:0034976 response to endoplasmic reticulum stress IEP HCCA
MF GO:0035529 NADH pyrophosphatase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0036293 response to decreased oxygen levels IEP HCCA
BP GO:0036294 cellular response to decreased oxygen levels IEP HCCA
BP GO:0042181 ketone biosynthetic process IEP HCCA
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042371 vitamin K biosynthetic process IEP HCCA
BP GO:0042372 phylloquinone biosynthetic process IEP HCCA
BP GO:0042373 vitamin K metabolic process IEP HCCA
BP GO:0042374 phylloquinone metabolic process IEP HCCA
BP GO:0042537 benzene-containing compound metabolic process IEP HCCA
BP GO:0042742 defense response to bacterium IEP HCCA
BP GO:0043067 regulation of programmed cell death IEP HCCA
BP GO:0043069 negative regulation of programmed cell death IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043900 obsolete regulation of multi-organism process IEP HCCA
BP GO:0043903 regulation of biological process involved in symbiotic interaction IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045088 regulation of innate immune response IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045730 respiratory burst IEP HCCA
BP GO:0046189 phenol-containing compound biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0047631 ADP-ribose diphosphatase activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0048585 negative regulation of response to stimulus IEP HCCA
MF GO:0050486 intramolecular transferase activity, transferring hydroxy groups IEP HCCA
BP GO:0050776 regulation of immune response IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050832 defense response to fungus IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0051702 biological process involved in interaction with symbiont IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0060548 negative regulation of cell death IEP HCCA
BP GO:0070482 response to oxygen levels IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070887 cellular response to chemical stimulus IEP HCCA
BP GO:0071453 cellular response to oxygen levels IEP HCCA
BP GO:0071456 cellular response to hypoxia IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
BP GO:0080151 positive regulation of salicylic acid mediated signaling pathway IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
BP GO:1901661 quinone metabolic process IEP HCCA
BP GO:1901663 quinone biosynthetic process IEP HCCA
BP GO:1901698 response to nitrogen compound IEP HCCA
BP GO:2000031 regulation of salicylic acid mediated signaling pathway IEP HCCA
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 235 303
IPR006016 UspA 5 144
No external refs found!