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  5. Pnu_g26615

Pnu_g26615


Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000754_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g26615
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00177580 evm_27.TU.AmTr_v1... High mobility group B protein 9 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g084170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_24776 No alias High mobility group B protein 15 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_28624 No alias High mobility group B protein 9 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_91155g0030 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g40091 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Pir_g09599 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013036 No alias not classified & original description: CDS=1-1740 0.03 OrthoFinder output from all 47 species
Spa_g29540 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
InterPro domains Description Start Stop
IPR001606 ARID_dom 86 170
IPR009071 HMG_box_dom 319 385
No external refs found!