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  5. Pnu_g24490

Pnu_g24490 (SUF4)


Aliases : SUF4

Description : FLC-binding component *(SUF4) of FRI-C transcription effector complex & original description: none


Gene families : OG0002334 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002334_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g24490

Target Alias Description ECC score Gene Family Method Actions
Adi_g104400 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.03 OrthoFinder output from all 47 species
Als_g54932 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.03 OrthoFinder output from all 47 species
Dcu_g22754 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.03 OrthoFinder output from all 47 species
Ehy_g19813 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.02 OrthoFinder output from all 47 species
Gb_38566 SUF4 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Nbi_g26521 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.03 OrthoFinder output from all 47 species
Pnu_g31144 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.03 OrthoFinder output from all 47 species
Ppi_g12837 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.03 OrthoFinder output from all 47 species
Sam_g35817 No alias FLC-binding component *(SUF4) of FRI-C transcription... 0.04 OrthoFinder output from all 47 species
Solyc02g081620.3.1 SUF4, Solyc02g081620 C2H2 zinc finger transcription factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!