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  5. Pnu_g21418

Pnu_g21418 (SCL-3, SCL3)


Aliases : SCL-3, SCL3

Description : GRAS-type transcription factor & original description: none


Gene families : OG0004383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004383_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g21418
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Ceric.25G050600.1 SCL-3, SCL3,... GRAS-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g06303 SCL-3, SCL3 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01000847001 SCL-3, SCL3 RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
Gb_12385 SCL-3, SCL3 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
LOC_Os01g71970.1 SCL-3, SCL3,... transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Lfl_g04973 SCL-3, SCL3 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_959414g0010 SCL-3, SCL3 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
MA_959414g0020 SCL-3, SCL3 transcription factor (GRAS) 0.01 OrthoFinder output from all 47 species
Ore_g18931 SCL-3, SCL3 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g22187 SCL-3, SCL3 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013291 SCL-3, SCL3 GRAS-type transcription factor & original description: CDS=1-1569 0.04 OrthoFinder output from all 47 species
Tin_g02781 SCL-3, SCL3 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009143 nucleoside triphosphate catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:1901292 nucleoside phosphate catabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 67 574
No external refs found!