Als_g59584 (SHP2, AGL5)

Aliases : SHP2, AGL5

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g59584
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
AT4G37940	AGL21	AGAMOUS-like 21	0.03	OrthoFinder output from all 47 species
Als_g47147	AGL42	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene05611.t1	ANR1, AGL44,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0684.g082058	AGL21	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cba_g17331	AGL9, SEP3	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g25122	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g29967	AGL16	MADS/AGL-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Ceric.07G004300.1	AGL10, CAL1,...	not classified & original description: pacid=50627317...	0.05	OrthoFinder output from all 47 species
Ceric.08G048300.1	AGL42, Ceric.08G048300	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.08G048600.1	AGL10, CAL1,...	not classified & original description: pacid=50638045...	0.04	OrthoFinder output from all 47 species
Ceric.12G051800.1	GL19, AGL19,...	MADS/AGL-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Dde_g25491	AGL8, FUL	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g50123	AGL3, SEP4	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Len_g09144	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g22235	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
MA_126898g0010	AGL71	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Msp_g20675	AGL16	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g19814	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Pnu_g29613	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g33044	AGL42	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g15354	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g27719	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Smo437868	AGL29	RNA biosynthesis.transcriptional activation.MADS box...	0.07	OrthoFinder output from all 47 species
Tin_g20318	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Zm00001e000846_P003	AGL4, SEP2,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e005708_P002	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e010125_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e012024_P001	AGL4, SEP2,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e015447_P001	AGL6, Zm00001e015447	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e023236_P005	AGL6, Zm00001e023236	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e038716_P004	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	56	103
IPR002487	TF_Kbox	131	215

External Links

No external refs found!

Als_g59584 (SHP2, AGL5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation