Als_g57232 (NUA, AtTPR)

Aliases : NUA, AtTPR

Description : nucleoporin of nuclear pore complex *(NUA) & original description: none

Gene families : OG0003960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003960_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g57232

Target	Alias	Description	ECC score	Gene Family Method
AT1G79280	NUA, AtTPR	nuclear pore anchor	0.07	OrthoFinder output from all 47 species
Adi_g055513	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.05	OrthoFinder output from all 47 species
Aev_g02612	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
Ala_g07174	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.05	OrthoFinder output from all 47 species
Aob_g26121	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Aop_g09061	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.06	OrthoFinder output from all 47 species
Aspi01Gene40431.t1	NUA, AtTPR,...	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Cba_g20856	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g33695	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.05	OrthoFinder output from all 47 species
Ceric.23G046200.1	NUA, AtTPR,...	nucleoporin of nuclear pore complex *(NUA) & original...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000404.46	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.02	OrthoFinder output from all 47 species
Dcu_g03218	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.07	OrthoFinder output from all 47 species
Dde_g09517	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
Ehy_g15153	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01036698001	NUA, AtTPR	Protein translocation.nucleus.nucleocytoplasmic...	0.05	OrthoFinder output from all 47 species
Gb_36757	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.03	OrthoFinder output from all 47 species
LOC_Os02g50799.1	NUA, AtTPR,...	NUA nucleoporin of nuclear pore complex	0.02	OrthoFinder output from all 47 species
Len_g13910	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.05	OrthoFinder output from all 47 species
Lfl_g03520	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.07	OrthoFinder output from all 47 species
MA_10287420g0010	NUA, AtTPR	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_10435343g0040	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.06	OrthoFinder output from all 47 species
MA_109011g0010	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.03	OrthoFinder output from all 47 species
MA_33097g0010	NUA, AtTPR	Nuclear-pore anchor OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
MA_929786g0010	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.02	OrthoFinder output from all 47 species
Mp2g14600.1	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.03	OrthoFinder output from all 47 species
Msp_g15712	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.05	OrthoFinder output from all 47 species
Ppi_g44472	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
Smo444132	NUA, AtTPR	Protein translocation.nucleus.nucleocytoplasmic...	0.03	OrthoFinder output from all 47 species
Solyc06g053570.2.1	NUA, AtTPR,...	NUA nucleoporin of nuclear pore complex	0.04	OrthoFinder output from all 47 species
Spa_g10543	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e023916_P004	NUA, AtTPR,...	NUA nucleoporin of nuclear pore complex	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006606	protein import into nucleus	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	HCCA
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0003972	RNA ligase (ATP) activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005680	anaphase-promoting complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
MF	GO:0008452	RNA ligase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012929	TPR/MLP1	1072	1183

External Links

No external refs found!

Als_g57232 (NUA, AtTPR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation