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  5. Als_g50860

Als_g50860


Description : component *(CABIN1) of HIRA chaperone complex & original description: none


Gene families : OG0005055 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g50860

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00042p00226140 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT4G32820 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g057051 No alias component *(CABIN1) of HIRA chaperone complex & original... 0.05 OrthoFinder output from all 47 species
Aev_g14037 No alias component *(CABIN1) of HIRA chaperone complex & original... 0.05 OrthoFinder output from all 47 species
Ala_g02727 No alias component *(CABIN1) of HIRA chaperone complex & original... 0.05 OrthoFinder output from all 47 species
Aop_g27480 No alias component *(CABIN1) of HIRA chaperone complex & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene13932.t1 Aspi01Gene13932 component *(CABIN1) of HIRA chaperone complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.11G076900.1 Ceric.11G076900 component *(CABIN1) of HIRA chaperone complex & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.164 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre16.g661400 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g12846 No alias component *(CABIN1) of HIRA chaperone complex & original... 0.03 OrthoFinder output from all 47 species
Ehy_g26405 No alias component *(CABIN1) of HIRA chaperone complex & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01035326001 No alias No description available 0.02 OrthoFinder output from all 47 species
Len_g29887 No alias component *(CABIN1) of HIRA chaperone complex & original... 0.02 OrthoFinder output from all 47 species
Lfl_g16194 No alias component *(CABIN1) of HIRA chaperone complex & original... 0.06 OrthoFinder output from all 47 species
Msp_g48757 No alias component *(CABIN1) of HIRA chaperone complex & original... 0.03 OrthoFinder output from all 47 species
Ore_g37604 No alias component *(CABIN1) of HIRA chaperone complex & original... 0.03 OrthoFinder output from all 47 species
Pir_g16256 No alias component *(CABIN1) of HIRA chaperone complex & original... 0.02 OrthoFinder output from all 47 species
Ppi_g30748 No alias component *(CABIN1) of HIRA chaperone complex & original... 0.03 OrthoFinder output from all 47 species
Smo428704 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc08g066010.2.1 Solyc08g066010 no description available(sp|f4jv59|cabin_arath : 1447.0) 0.03 OrthoFinder output from all 47 species
Tin_g11333 No alias component *(CABIN1) of HIRA chaperone complex & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!