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  5. Als_g50028

Als_g50028 (PAT1)


Aliases : PAT1

Description : GRAS-type transcription factor & original description: none


Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g50028
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00043p00136400 PAT1,... RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
AMTR_s00088p00161000 PAT1,... RNA biosynthesis.transcriptional activation.GRAS... 0.05 OrthoFinder output from all 47 species
AMTR_s00186p00018500 SCL1,... RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
AT1G50600 SCL5 scarecrow-like 5 0.02 OrthoFinder output from all 47 species
AT4G17230 SCL13 SCARECROW-like 13 0.03 OrthoFinder output from all 47 species
Adi_g108349 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02325 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08305 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12229 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21753 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g37619 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05233 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01362 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26689 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38043.t1 PAT1, Aspi01Gene38043 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010718 PAT1 GRAS-type transcription factor & original description: CDS=1-1851 0.03 OrthoFinder output from all 47 species
Azfi_s0084.g039020 PAT1 GRAS-type transcription factor & original description: CDS=1-2502 0.03 OrthoFinder output from all 47 species
Cba_g16684 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G109900.1 PAT1, Ceric.01G109900 GRAS-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.14G087500.1 PAT1, Ceric.14G087500 GRAS-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.26G064200.1 PAT1, Ceric.26G064200 GRAS-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g00898 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22968 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05689 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12997 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03424 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03441 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02729 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05994 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010007001 SCL1 RNA biosynthesis.transcriptional activation.GRAS... 0.05 OrthoFinder output from all 47 species
GSVIVT01014570001 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
GSVIVT01026482001 SCL1 RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
GSVIVT01030047001 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
GSVIVT01037777001 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
Gb_03123 PAT1 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Gb_40278 SCL5 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
LOC_Os01g65900.1 SCL1, LOC_Os01g65900 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
LOC_Os03g09280.2 PAT1, LOC_Os03g09280 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
LOC_Os07g36170.2 PAT1, LOC_Os07g36170 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
LOC_Os07g39470.1 PAT1, LOC_Os07g39470 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Len_g12269 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g20939 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04060 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18488 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28608 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g30488 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
MA_9896333g0010 SCL1 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Msp_g27471 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g10124 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19162 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20339 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g10322 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g11761 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16566 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61131 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g064550.1.1 SCL1, Solyc04g064550 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Solyc06g035620.3.1 PAT1, Solyc06g035620 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc12g005340.3.1 PAT1, Solyc12g005340 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Zm00001e010646_P001 PAT1, Zm00001e010646 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 240 608
No external refs found!