Als_g37408

Description : component *(eL36) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000800 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000800_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g37408

Target	Alias	Description	ECC score	Gene Family Method
AT2G37600	No alias	Ribosomal protein L36e family protein	0.05	OrthoFinder output from all 47 species
AT3G53740	No alias	Ribosomal protein L36e family protein	0.04	OrthoFinder output from all 47 species
AT5G02450	No alias	Ribosomal protein L36e family protein	0.04	OrthoFinder output from all 47 species
Aspi01Gene34579.t1	Aspi01Gene34579	component *(eL36) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0049.g030800	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0383.g067431	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cba_g03577	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021493.69	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Cre12.g484050	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
LOC_Os01g62350.1	LOC_Os01g62350	component RPL36 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os05g38520.1	LOC_Os05g38520	component RPL36 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Msp_g00137	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g44089	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g05044	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c14_19960V3.1	Pp3c14_19960	Ribosomal protein L36e family protein	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004334	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g07231	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g31192	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g45996	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Smo439710	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc03g025520.4.1	Solyc03g025520	component RPL36 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Spa_g03176	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g03177	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g17529	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e027238_P001	Zm00001e027238	component RPL36 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e031832_P002	Zm00001e031832	component RPL36 of LSU proteome component	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0034227	tRNA thio-modification	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000509	Ribosomal_L36e	30	123

External Links

No external refs found!

Als_g37408

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation