Description : component *(eS1) of small ribosomal-subunit (SSU) proteome & original description: none
Gene families : OG0001731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001731_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Als_g37019 | |
Cluster | HCCA: Cluster_136 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G04840 | No alias | Ribosomal protein S3Ae | 0.02 | OrthoFinder output from all 47 species | |
Adi_g060842 | No alias | component *(eS1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g59790 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Ceric.10G049700.1 | Ceric.10G049700 | component *(eS1) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020710.39 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01021836001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os02g18550.1 | LOC_Os02g18550 | component RPS3a of SSU proteome | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g10340.1 | LOC_Os03g10340 | component RPS3a of SSU proteome | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os12g21798.1 | LOC_Os12g21798 | component RPS3a of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g26102 | No alias | component *(eS1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Mp6g02810.1 | No alias | component RPS3a of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
Pir_g28995 | No alias | component *(eS1) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g06811 | No alias | component *(eS1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g14495 | No alias | component *(eS1) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Solyc03g097900.3.1 | Solyc03g097900 | component RPS3a of SSU proteome | 0.02 | OrthoFinder output from all 47 species | |
Solyc06g072490.3.1 | Solyc06g072490 | component RPS3a of SSU proteome | 0.02 | OrthoFinder output from all 47 species | |
Solyc09g082520.3.1 | Solyc09g082520 | component RPS3a of SSU proteome | 0.02 | OrthoFinder output from all 47 species | |
Spa_g05776 | No alias | component *(eS1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e038777_P001 | Zm00001e038777 | component RPS3a of SSU proteome | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
CC | GO:0005789 | endoplasmic reticulum membrane | IEP | HCCA |
BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
CC | GO:0016020 | membrane | IEP | HCCA |
BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | HCCA |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
CC | GO:0031090 | organelle membrane | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
BP | GO:0050789 | regulation of biological process | IEP | HCCA |
BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0065007 | biological regulation | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001593 | Ribosomal_S3Ae | 14 | 219 |
No external refs found! |