1. Home
  2. Species
  3. Alsophila latebrosa
  4. Sequence
  5. Als_g34097

Als_g34097 (AXR6, ATCUL1, CUL1)


Aliases : AXR6, ATCUL1, CUL1

Description : scaffold component *(CUL1) of SCF E3 ubiquitin ligase complexes & original description: none


Gene families : OG0001888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g34097

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00258510 AXR6, ATCUL1,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Adi_g087062 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Adi_g116543 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ceric.28G004800.1 AXR6, ATCUL1,... scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Dac_g01754 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Dcu_g04834 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
GSVIVT01010966001 AXR6, ATCUL1, CUL1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01017738001 AXR6, ATCUL1, CUL1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_16689 AXR6, ATCUL1, CUL1 scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.02 OrthoFinder output from all 47 species
Len_g59431 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Lfl_g06203 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ore_g30275 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Sam_g12468 No alias scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Smo173394 AXR6, ATCUL1, CUL1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Solyc09g074680.3.1 AXR6, ATCUL1,... scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.03 OrthoFinder output from all 47 species
Spa_g49448 AXR6, ATCUL1, CUL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027502_P001 AXR6, ATCUL1,... scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.04 OrthoFinder output from all 47 species
Zm00001e040431_P004 AXR6, ATCUL1,... scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
MF GO:0031625 ubiquitin protein ligase binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001373 Cullin_N 15 647
IPR019559 Cullin_neddylation_domain 674 736
No external refs found!