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  5. Pnu_g13514

Pnu_g13514


Description : assembly factor involved in RuBisCo assembly *(RbcX) & original description: none


Gene families : OG0005102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g13514
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Aev_g32609 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Aob_g01138 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Aob_g25994 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.05 OrthoFinder output from all 47 species
Aop_g00191 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0262.g060824 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Cba_g46690 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.07 OrthoFinder output from all 47 species
Ceric.33G059700.1 Ceric.33G059700 assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Dac_g08983 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Dcu_g04377 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.06 OrthoFinder output from all 47 species
Dde_g46091 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Ehy_g00615 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Ehy_g02091 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01025257001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Len_g00251 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Lfl_g05877 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.02 OrthoFinder output from all 47 species
Ore_g04011 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species
Pir_g00338 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.03 OrthoFinder output from all 47 species
Ppi_g00617 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.02 OrthoFinder output from all 47 species
Sam_g25402 No alias assembly factor involved in RuBisCo assembly *(RbcX) &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0044183 protein folding chaperone IEA Interproscan
BP GO:0110102 ribulose bisphosphate carboxylase complex assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR003435 Chaperonin_RcbX 173 245
No external refs found!