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  5. Als_g29975

Als_g29975


Description : not classified & original description: none


Gene families : OG0002397 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002397_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g29975
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT2G41835 No alias zinc finger (C2H2 type, AN1-like) family protein 0.04 OrthoFinder output from all 47 species
Adi_g060268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g37949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g36471 PMZ, SAP12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00217 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene27980.t2 Aspi01Gene27980 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54444.t1 Aspi01Gene54444 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.17G055100.1 PMZ, SAP12,... not classified & original description: pacid=50618072... 0.04 OrthoFinder output from all 47 species
Dac_g10488 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g13892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033300001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 OrthoFinder output from all 47 species
LOC_Os09g21710.1 PMZ, SAP12,... C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Len_g20576 PMZ, SAP12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_158847g0010 PMZ, SAP12 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Msp_g10026 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g12360 PMZ, SAP12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g087210.3.1 PMZ, SAP12,... C2H2 zinc finger transcription factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000058 Znf_AN1 52 89
IPR000058 Znf_AN1 140 177
No external refs found!