Als_g29206

Description : regulatory protein *(BDR) involved in RNA polymerase-II transcription & original description: none

Gene families : OG0002847 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002847_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g29206

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00142p00104490	evm_27.TU.AmTr_v1...	No description available	0.05	OrthoFinder output from all 47 species
Ceric.07G056700.1	Ceric.07G056700	regulatory protein *(BDR) involved in RNA polymerase-II...	0.06	OrthoFinder output from all 47 species
Gb_22043	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Lfl_g15816	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Mp4g01870.1	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Nbi_g36175	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Pir_g11843	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.02	OrthoFinder output from all 47 species
Sam_g16219	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Spa_g04580	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
Zm00001e024973_P001	Zm00001e024973	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012921	SPOC_C	561	682
IPR003618	TFIIS_cen_dom	240	330

External Links

No external refs found!

Als_g29206

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation