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  5. Als_g28131

Als_g28131


Description : PLATZ-type transcription factor & original description: none


Gene families : OG0000228 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000228_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g28131
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00211460 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.02 OrthoFinder output from all 47 species
AMTR_s00008p00208550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.02 OrthoFinder output from all 47 species
Adi_g077336 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g47406 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12441 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0048.g030564 No alias PLATZ-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Dde_g31293 No alias PLATZ-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001279001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.04 OrthoFinder output from all 47 species
GSVIVT01013149001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.05 OrthoFinder output from all 47 species
GSVIVT01013455001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.04 OrthoFinder output from all 47 species
LOC_Os10g42410.3 LOC_Os10g42410 transcription factor (PLATZ) 0.02 OrthoFinder output from all 47 species
Ore_g35505 No alias PLATZ-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g27584 No alias PLATZ-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0194.g025441 No alias not classified & original description: CDS=1-1005 0.03 OrthoFinder output from all 47 species
Solyc04g008090.4.1 Solyc04g008090 transcription factor (PLATZ) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
InterPro domains Description Start Stop
IPR006734 PLATZ 77 147
No external refs found!