Pnu_g13107

Description : component *(uS13c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0004147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004147_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pnu_g13107
Cluster	HCCA: Cluster_109

Target	Alias	Description	ECC score	Gene Family Method
AT5G14320	No alias	Ribosomal protein S13/S18 family	0.05	OrthoFinder output from all 47 species
Aev_g04341	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ala_g00666	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Als_g09424	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Azfi_s0065.g035921	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ceric.05G059300.1	Ceric.05G059300	component *(uS13c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cre12.g493950	No alias	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Dcu_g44492	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g00682	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
GSVIVT01008933001	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Gb_24491	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.04	OrthoFinder output from all 47 species
LOC_Os03g49710.1	LOC_Os03g49710	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.05	OrthoFinder output from all 47 species
Len_g05067	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Len_g07705	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Lfl_g00631	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
MA_10431241g0010	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.03	OrthoFinder output from all 47 species
Mp1g18230.1	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.08	OrthoFinder output from all 47 species
Nbi_g15772	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ore_g09656	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pir_g35705	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ppi_g02591	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014746	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Spa_g00577	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Tin_g04300	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Zm00001e005396_P004	Zm00001e005396	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
BP	GO:0006536	glutamate metabolic process	IEP	HCCA
BP	GO:0006537	glutamate biosynthetic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009538	photosystem I reaction center	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0010109	regulation of photosynthesis	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
MF	GO:0010242	oxygen evolving activity	IEP	HCCA
MF	GO:0015930	glutamate synthase activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	HCCA
MF	GO:0016854	racemase and epimerase activity	IEP	HCCA
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	HCCA
BP	GO:0042549	photosystem II stabilization	IEP	HCCA
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071586	CAAX-box protein processing	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	104	211

External Links

No external refs found!

Pnu_g13107

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation