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  5. Als_g27656

Als_g27656


Description : not classified & original description: none


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g27656
Cluster HCCA: Cluster_250

Target Alias Description ECC score Gene Family Method Actions
Adi_g079530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g00969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre16.g662702 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g04880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g01272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16482 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g09433 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g33196 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27184 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g090910.3.1 Solyc02g090910 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Tin_g00806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990316 Atg1/ULK1 kinase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 15 73
IPR000504 RRM_dom 521 575
IPR000504 RRM_dom 104 164
No external refs found!