Als_g27070 (RAP2.12)

Aliases : RAP2.12

Description : transcription factor component *(HRE/RAP2.12) of oxygen-sensor activity & original description: none

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g27070

Target	Alias	Description	ECC score	Gene Family Method
AT3G57600	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT5G61590	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
Adi_g031493	tny	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g034904	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g057545	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g111958	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aev_g00443	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g04116	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Aob_g30583	LEP	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g18832	ERF7, ATERF7, ATERF-7	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene53875.t1	DEAR4, RAP2.10,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Azfi_s0013.g013216	No alias	subgroup ERF-V transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g22960	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g25390	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Ehy_g27343	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01016684001	RAP2.12	Ethylene-responsive transcription factor RAP2-12...	0.03	OrthoFinder output from all 47 species
GSVIVT01033416001	RAP2.11	External stimuli response.biotic...	0.01	OrthoFinder output from all 47 species
LOC_Os03g64260.1	ERF1, ATERF1,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Lfl_g25640	No alias	subgroup ERF-III transcription factor & original...	0.01	OrthoFinder output from all 47 species
MA_10436317g0020	LEP	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp2g11080.1	HRE2	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Nbi_g00480	ERF7, ATERF7, ATERF-7	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Nbi_g10464	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g22946	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g17467	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002282	No alias	subgroup ERF-VI transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g52552	No alias	subgroup ERF-IV/DREB2 transcription factor & original...	0.02	OrthoFinder output from all 47 species
Solyc12g049560.2.1	RAP2.2, Solyc12g049560	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Spa_g01688	No alias	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Spa_g05596	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g06936	DEAR2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g24172	DEAR3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e000689_P001	Zm00001e000689	transcription factor (DREB)	0.01	OrthoFinder output from all 47 species
Zm00001e026911_P005	DREB2A, DREB2,...	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003839	gamma-glutamylcyclotransferase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005685	U1 snRNP	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006376	mRNA splice site selection	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006749	glutathione metabolic process	IEP	HCCA
BP	GO:0006751	glutathione catabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
MF	GO:0008131	primary amine oxidase activity	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	HCCA
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016842	amidine-lyase activity	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	HCCA
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	HCCA
BP	GO:0043171	peptide catabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044273	sulfur compound catabolic process	IEP	HCCA
MF	GO:0048038	quinone binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0097525	spliceosomal snRNP complex	IEP	HCCA
CC	GO:0120114	Sm-like protein family complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	135	183

External Links

No external refs found!

Als_g27070 (RAP2.12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation