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  5. Pnu_g12682

Pnu_g12682 (RPT3)


Aliases : RPT3

Description : regulatory component *(RPT3) of 26S proteasome & original description: none


Gene families : OG0002973 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002973_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g12682
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AT5G58290 RPT3 regulatory particle triple-A ATPase 3 0.03 OrthoFinder output from all 47 species
Adi_g077047 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Als_g32958 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Azfi_s0021.g015701 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.46 RPT3 26S proteasome regulatory subunit 6B homolog... 0.01 OrthoFinder output from all 47 species
Cre09.g402450 RPT3 Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Dac_g16904 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Gb_28081 RPT3 regulatory component RPT3 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Mp8g10830.1 RPT3 regulatory component RPT3 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Ore_g18564 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Solyc06g082660.4.1 RPT3, Solyc06g082660 regulatory component RPT3 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Spa_g04802 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR032501 Prot_ATP_ID_OB_C 76 131
IPR041569 AAA_lid_3 345 387
IPR003959 ATPase_AAA_core 189 322
No external refs found!