Als_g23404 (ATRNL, AtRLG1, RNL)

Aliases : ATRNL, AtRLG1, RNL

Description : multifunctional tRNA ligase *(RLG1) & original description: none

Gene families : OG0002159 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002159_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g23404

Target	Alias	Description	ECC score	Gene Family Method
Aob_g24418	ATRNL, AtRLG1, RNL	multifunctional tRNA ligase *(RLG1) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene09452.t1	ATRNL, AtRLG1,...	multifunctional tRNA ligase *(RLG1) & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene42898.t1	ATRNL, AtRLG1,...	multifunctional tRNA ligase *(RLG1) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0072.g036985	ATRNL, AtRLG1, RNL	multifunctional tRNA ligase *(RLG1) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g19535	ATRNL, AtRLG1, RNL	multifunctional tRNA ligase *(RLG1) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g03487	ATRNL, AtRLG1, RNL	multifunctional tRNA ligase *(RLG1) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os07g09400.1	ATRNL, AtRLG1,...	tRNA ligase 1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Lfl_g36205	ATRNL, AtRLG1, RNL	multifunctional tRNA ligase *(RLG1) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g29930	ATRNL, AtRLG1, RNL	multifunctional tRNA ligase *(RLG1) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003078	ATRNL, AtRLG1, RNL	multifunctional tRNA ligase *(RLG1) & original...	0.02	OrthoFinder output from all 47 species
Sam_g15639	No alias	multifunctional tRNA ligase *(RLG1) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g26868	No alias	multifunctional tRNA ligase *(RLG1) & original description: none	0.02	OrthoFinder output from all 47 species
Smo186974	ATRNL, AtRLG1, RNL	tRNA ligase 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003972	RNA ligase (ATP) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
MF	GO:0008452	RNA ligase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	HCCA
CC	GO:0005680	anaphase-promoting complex	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015965	tRNA_lig_PDEase	1037	1114

External Links

No external refs found!

Als_g23404 (ATRNL, AtRLG1, RNL)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation