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  5. Als_g23233

Als_g23233


Description : CORVET-specific component *(VPS3) of HOPS/CORVET membrane tethering complexes & original description: none


Gene families : OG0006416 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006416_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g23233

Target Alias Description ECC score Gene Family Method Actions
AT1G22860 No alias Vacuolar sorting protein 39 0.04 OrthoFinder output from all 47 species
Aev_g44598 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.05 OrthoFinder output from all 47 species
Aob_g10925 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Aspi01Gene42559.t1 Aspi01Gene42559 CORVET-specific component *(VPS3) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Ceric.1Z286500.1 Ceric.1Z286500 not classified & original description: pacid=50637237... 0.03 OrthoFinder output from all 47 species
Ceric.24G003400.1 Ceric.24G003400 CORVET-specific component *(VPS3) of HOPS/CORVET... 0.05 OrthoFinder output from all 47 species
Cre17.g709400 No alias Vesicle trafficking.target membrane... 0.02 OrthoFinder output from all 47 species
Mp1g01080.1 No alias CORVET-specific component VPS3 of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Msp_g14567 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Nbi_g03840 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.06 OrthoFinder output from all 47 species
Pir_g13040 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
Sam_g16295 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Solyc05g015210.4.1 Solyc05g015210 CORVET-specific component VPS3 of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Spa_g12642 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.04 OrthoFinder output from all 47 species
Zm00001e029702_P001 Zm00001e029702 CORVET-specific component VPS3 of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005247 voltage-gated chloride channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006821 chloride transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0061666 UFM1 ligase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0071568 UFM1 transferase activity IEP HCCA
BP GO:0071569 protein ufmylation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 657 724
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 972 1079
IPR001180 CNH_dom 287 448
IPR000547 Clathrin_H-chain/VPS_repeat 822 959
No external refs found!