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  5. Als_g19919

Als_g19919


Description : component *(VPS51/UNH) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: none


Gene families : OG0003991 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003991_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g19919

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00178420 evm_27.TU.AmTr_v1... Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Aev_g09966 No alias component *(VPS51/UNH) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Ala_g06971 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Aop_g01374 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Ceric.34G060300.1 Ceric.34G060300 component *(VPS51/UNH) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Cre09.g404650 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.05 OrthoFinder output from all 47 species
Dcu_g16393 No alias component *(VPS51/UNH) of GARP/EARP... 0.09 OrthoFinder output from all 47 species
GSVIVT01028119001 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Gb_16420 No alias component VPS51/UNH of GARP/EARP... 0.04 OrthoFinder output from all 47 species
LOC_Os03g52770.1 LOC_Os03g52770 component VPS51/UNH of GARP/EARP... 0.09 OrthoFinder output from all 47 species
Mp6g05400.1 No alias component VPS51/UNH of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Msp_g26157 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Nbi_g18378 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Pir_g11809 No alias component *(VPS51/UNH) of GARP/EARP... 0.09 OrthoFinder output from all 47 species
Pp3c12_23510V3.1 Pp3c12_23510 Vps51/Vps67 family (components of vesicular transport) protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003573 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Sam_g29562 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Smo178902 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.06 OrthoFinder output from all 47 species
Smo440937 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.05 OrthoFinder output from all 47 species
Solyc06g009650.3.1 Solyc06g009650 component VPS51/UNH of GARP/EARP... 0.09 OrthoFinder output from all 47 species
Spa_g06241 No alias component *(VPS51/UNH) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Tin_g04684 No alias component *(VPS51/UNH) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Zm00001e012075_P003 Zm00001e012075 component VPS51/UNH of GARP/EARP... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004181 metallocarboxypeptidase activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!