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  5. Als_g09965

Als_g09965


Description : regulatory component *(RPT4) of 26S proteasome & original description: none


Gene families : OG0004670 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004670_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g09965

Target Alias Description ECC score Gene Family Method Actions
AT1G45000 No alias AAA-type ATPase family protein 0.04 OrthoFinder output from all 47 species
Aev_g05319 RPT4A regulatory component *(RPT4) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ceric.04G052100.1 Ceric.04G052100 regulatory component *(RPT4) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000718.6 No alias Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Cre17.g710150 No alias Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
Dde_g20353 RPT4A regulatory component *(RPT4) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
LOC_Os02g10640.1 LOC_Os02g10640 regulatory component RPT4 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Mp7g14270.1 No alias regulatory component RPT4 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Ore_g06165 RPT4A regulatory component *(RPT4) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Solyc01g109940.3.1 Solyc01g109940 regulatory component RPT4 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Tin_g16778 RPT4A regulatory component *(RPT4) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Zm00001e014032_P001 Zm00001e014032 regulatory component RPT4 of 26S proteasome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0030150 protein import into mitochondrial matrix IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1990542 mitochondrial transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR032501 Prot_ATP_ID_OB_C 151 206
IPR003959 ATPase_AAA_core 264 397
IPR041569 AAA_lid_3 420 462
No external refs found!