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  5. Als_g09382

Als_g09382 (HIS1-3)


Aliases : HIS1-3

Description : linker histone *(H1) & original description: none


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g09382
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.02 OrthoFinder output from all 47 species
Adi_g026221 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06787 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09733 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g36246 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06758.t1 HIS1-3, Aspi01Gene06758 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene23118.t1 Aspi01Gene23118 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42128.t1 HIS1-3, Aspi01Gene42128 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Cre13.g567450 HIS1-3 Chromatin organisation.histones.H1 linker histone 0.02 OrthoFinder output from all 47 species
GSVIVT01018114001 No alias Chromatin organisation.histones.H1 linker histone 0.03 OrthoFinder output from all 47 species
LOC_Os04g18090.1 HIS1-3, LOC_Os04g18090 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Len_g20176 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10436125g0020 ATTRB1, TRB1 linker histone (H1) 0.02 OrthoFinder output from all 47 species
MA_500183g0010 HIS1-3 linker histone (H1) 0.03 OrthoFinder output from all 47 species
Pir_g20263 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004314 No alias linker histone *(H1) & original description: CDS=99-770 0.03 OrthoFinder output from all 47 species
Solyc09g066100.3.1 Solyc09g066100 linker histone (H1) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 36 102
No external refs found!