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  5. Als_g07455

Als_g07455


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g07455

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00232590 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.04 OrthoFinder output from all 47 species
Adi_g005487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033331 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098056 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g20571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29330 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g33897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g42385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30557 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g37976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06739 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07134 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g12718 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g17657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g21288 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26666 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30489 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39842 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g40533 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59996 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g18696 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g24083 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18332 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21473 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g39230 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02316.t1 Aspi01Gene02316 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19500.t1 Aspi01Gene19500 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52571.t1 Aspi01Gene52571 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61045.t1 VAC1, ECB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023921 No alias not classified & original description: CDS=1-2157 0.04 OrthoFinder output from all 47 species
Azfi_s0229.g059115 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2115 0.05 OrthoFinder output from all 47 species
Cba_g04014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05882 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07249 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g13786 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20561 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22830 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g26306 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35072 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g35519 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g60651 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67304 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g72718 MEF21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g76220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.36G058400.1 Ceric.36G058400 not classified & original description: pacid=50568396... 0.04 OrthoFinder output from all 47 species
Dac_g15083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18772 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32204 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08317 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g43291 OTP86 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g45907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22315 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028819001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.03 OrthoFinder output from all 47 species
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_37976 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g36350.1 MEF21, LOC_Os05g36350 RNA editing factor (MEF21) 0.03 OrthoFinder output from all 47 species
Len_g03900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g08835 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g11419 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g16226 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g18967 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26486 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g27681 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07688 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18775 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_482767g0010 OTP84 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
MA_9463538g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
Msp_g03209 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22363 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41131 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g24055 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g24894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12690 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41642 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02558 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02817 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03406 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06676 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12352 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13332 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g34529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g44175 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g51837 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57539 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g57981 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63187 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63777 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63804 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g63824 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32250 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53021 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09894 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23796 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g04696 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09800 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g15048 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g22746 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g22999 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27411 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 273 296
IPR002885 Pentatricopeptide_repeat 576 599
IPR002885 Pentatricopeptide_repeat 172 194
IPR002885 Pentatricopeptide_repeat 780 802
IPR002885 Pentatricopeptide_repeat 677 699
IPR046848 E_motif 820 880
IPR002885 Pentatricopeptide_repeat 501 547
IPR002885 Pentatricopeptide_repeat 703 750
IPR002885 Pentatricopeptide_repeat 301 347
IPR002885 Pentatricopeptide_repeat 602 649
IPR002885 Pentatricopeptide_repeat 100 146
IPR002885 Pentatricopeptide_repeat 197 244
IPR002885 Pentatricopeptide_repeat 399 446
No external refs found!