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  5. Als_g06300

Als_g06300 (STM, SHM1, SHMT1)


Aliases : STM, SHM1, SHMT1

Description : EC_2.1 transferase transferring one-carbon group & original description: none


Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g06300
Cluster HCCA: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00219150 STM, SHM1,... Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.1 OrthoFinder output from all 47 species
AMTR_s00050p00205910 AtSHMT3, SHM3,... Serine hydroxymethyltransferase 3, chloroplastic... 0.02 OrthoFinder output from all 47 species
AT4G37930 STM, SHM1, SHMT1 serine transhydroxymethyltransferase 1 0.12 OrthoFinder output from all 47 species
Adi_g081286 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Aev_g09895 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.1 OrthoFinder output from all 47 species
Ala_g06688 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.14 OrthoFinder output from all 47 species
Aob_g16059 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.11 OrthoFinder output from all 47 species
Aop_g11376 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.14 OrthoFinder output from all 47 species
Aspi01Gene56437.t1 STM, SHM1,... EC_2.1 transferase transferring one-carbon group &... 0.11 OrthoFinder output from all 47 species
Azfi_s0102.g044437 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.11 OrthoFinder output from all 47 species
Cba_g04655 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Cba_g12674 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.12 OrthoFinder output from all 47 species
Ceric.28G027700.1 STM, SHM1,... EC_2.1 transferase transferring one-carbon group &... 0.14 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.31 SHM4 Enzyme classification.EC_2 transferases.EC_2.1... 0.03 OrthoFinder output from all 47 species
Cre16.g664550 STM, SHM1, SHMT1 Amino acid metabolism.biosynthesis.serine... 0.01 OrthoFinder output from all 47 species
Dac_g28484 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.1 OrthoFinder output from all 47 species
Dcu_g14554 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.13 OrthoFinder output from all 47 species
Dcu_g21464 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 47 species
Dde_g12981 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.01 OrthoFinder output from all 47 species
Dde_g20927 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.09 OrthoFinder output from all 47 species
Ehy_g16256 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.09 OrthoFinder output from all 47 species
GSVIVT01003859001 STM, SHM1, SHMT1 Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.12 OrthoFinder output from all 47 species
LOC_Os03g52840.1 STM, SHM1,... serine hydroxymethyltransferase 0.09 OrthoFinder output from all 47 species
Len_g12401 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.13 OrthoFinder output from all 47 species
Len_g48106 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Lfl_g04055 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
MA_99276g0010 STM, SHM1, SHMT1 serine hydroxymethyltransferase 0.08 OrthoFinder output from all 47 species
Mp2g08370.1 STM, SHM1, SHMT1 serine hydroxymethyltransferase 0.09 OrthoFinder output from all 47 species
Msp_g48544 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.17 OrthoFinder output from all 47 species
Nbi_g03063 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.14 OrthoFinder output from all 47 species
Ore_g09056 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.09 OrthoFinder output from all 47 species
Pir_g00993 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Pnu_g10887 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 47 species
Pp3c1_27990V3.1 STM, SHM1,... serine transhydroxymethyltransferase 1 0.01 OrthoFinder output from all 47 species
Ppi_g14402 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Sam_g36946 No alias EC_2.1 transferase transferring one-carbon group &... 0.11 OrthoFinder output from all 47 species
Smo270566 STM, SHM1, SHMT1 Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.07 OrthoFinder output from all 47 species
Solyc02g091560.3.1 STM, SHM1,... serine hydroxymethyltransferase 0.13 OrthoFinder output from all 47 species
Spa_g16771 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Tin_g10060 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.12 OrthoFinder output from all 47 species
Zm00001e005607_P001 STM, SHM1,... serine hydroxymethyltransferase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 61 458
No external refs found!