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  5. Als_g04823

Als_g04823 (SE)


Aliases : SE

Description : component *(SERRATE) of DCL1-HYL1 miRNA biogenesis complex & original description: none


Gene families : OG0003096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003096_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g04823

Target Alias Description ECC score Gene Family Method Actions
AT2G27100 SE C2H2 zinc-finger protein SERRATE (SE) 0.03 OrthoFinder output from all 47 species
Adi_g061118 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Aob_g02258 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Aspi01Gene05173.t1 SE, Aspi01Gene05173 component *(SERRATE) of DCL1-HYL1 miRNA bioGenesis... 0.03 OrthoFinder output from all 47 species
Cba_g20344 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Dcu_g14201 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.04 OrthoFinder output from all 47 species
Dde_g10898 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.04 OrthoFinder output from all 47 species
Ehy_g08633 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
GSVIVT01027348001 SE RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
Gb_37971 SE C2H2 zinc finger transcription factor. component SERRATE... 0.04 OrthoFinder output from all 47 species
Lfl_g02072 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
MA_10426519g0010 SE C2H2 zinc finger transcription factor. component SERRATE... 0.03 OrthoFinder output from all 47 species
Ore_g36418 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.06 OrthoFinder output from all 47 species
Ppi_g62657 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006089 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s3319.g028716 SE not classified & original description: CDS=1-597 0.03 OrthoFinder output from all 47 species
Sam_g19467 No alias component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Tin_g09411 SE component *(SERRATE) of DCL1-HYL1 miRNA biogenesis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR007042 SERRATE/Ars2_C 53 275
No external refs found!