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  5. Als_g03832

Als_g03832


Description : component *(CWC21) of MAC spliceosome-associated complex & original description: none


Gene families : OG0003203 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003203_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g03832

Target Alias Description ECC score Gene Family Method Actions
Ala_g18481 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Aop_g06645 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.02 OrthoFinder output from all 47 species
Aspi01Gene00584.t1 Aspi01Gene00584 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0020.g015475 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Cba_g27324 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020816.107 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre16.g672150 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01001478001 No alias No description available 0.05 OrthoFinder output from all 47 species
Len_g32499 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Lfl_g04122 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Mp1g28520.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g04933 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.02 OrthoFinder output from all 47 species
Pir_g15377 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Pnu_g13094 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Pnu_g22969 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c8_5951V3.1 Pp3c8_5951 No annotation 0.01 OrthoFinder output from all 47 species
Ppi_g10244 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Solyc09g092250.3.1 Solyc09g092250 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g41651 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Zm00001e017191_P001 Zm00001e017191 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e025611_P001 Zm00001e025611 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR017868 Filamin/ABP280_repeat-like 75 175
IPR000504 RRM_dom 288 348
No external refs found!