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  5. Als_g02480

Als_g02480 (CDC20.2)


Aliases : CDC20.2

Description : substrate specificity component *(CDC20) of APC/C E3 ubiquitin ligase complex & original description: none


Gene families : OG0001302 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001302_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g02480

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00080p00109660 CDC20.1,... Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.02 OrthoFinder output from all 47 species
Adi_g106213 CDC20.2 substrate specificity component *(CDC20) of APC/C E3... 0.02 OrthoFinder output from all 47 species
Dac_g04646 CDC20.2 substrate specificity component *(CDC20) of APC/C E3... 0.05 OrthoFinder output from all 47 species
Dde_g12307 CDC20.2 substrate specificity component *(CDC20) of APC/C E3... 0.04 OrthoFinder output from all 47 species
Dde_g22347 CDC20.2 substrate specificity component *(CDC20) of APC/C E3... 0.03 OrthoFinder output from all 47 species
Ehy_g27425 CDC20.2 substrate specificity component *(CDC20) of APC/C E3... 0.03 OrthoFinder output from all 47 species
Gb_30041 CDC20.2 CDC20-type (APC/C)-dependent ubiquitination activator protein 0.02 OrthoFinder output from all 47 species
Msp_g02477 CDC20.2 substrate specificity component *(CDC20) of APC/C E3... 0.03 OrthoFinder output from all 47 species
Pnu_g08227 CDC20.1 substrate specificity component *(CDC20) of APC/C E3... 0.03 OrthoFinder output from all 47 species
Ppi_g11513 CDC20.2 substrate specificity component *(CDC20) of APC/C E3... 0.03 OrthoFinder output from all 47 species
Spa_g22565 CDC20.2 substrate specificity component *(CDC20) of APC/C E3... 0.07 OrthoFinder output from all 47 species
Spa_g53978 CDC20.2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014230_P001 CDC20.1, Zm00001e014230 CDC20-type (APC/C)-dependent ubiquitination activator protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034508 centromere complex assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 398 432
IPR001680 WD40_repeat 266 297
IPR001680 WD40_repeat 310 348
IPR024977 Apc4_WD40_dom 180 236
No external refs found!