Pnu_g08821

Description : strigolactone signal modulator *(SMXL) & original description: none

Gene families : OG0002073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002073_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pnu_g08821

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00166860	evm_27.TU.AmTr_v1...	Phytohormones.strigolactone.perception and signal...	0.02	OrthoFinder output from all 47 species
AMTR_s00019p00252890	evm_27.TU.AmTr_v1...	Phytohormones.strigolactone.perception and signal...	0.03	OrthoFinder output from all 47 species
AMTR_s00030p00222400	evm_27.TU.AmTr_v1...	Phytohormones.strigolactone.perception and signal...	0.02	OrthoFinder output from all 47 species
AT3G52490	No alias	Double Clp-N motif-containing P-loop nucleoside...	0.04	OrthoFinder output from all 47 species
Adi_g098724	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g21284	No alias	strigolactone signal modulator *(SMXL) & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01029304001	No alias	Phytohormones.strigolactone.perception and signal...	0.02	OrthoFinder output from all 47 species
LOC_Os02g33460.1	LOC_Os02g33460	SMXL strigolactone signal transducer	0.02	OrthoFinder output from all 47 species
LOC_Os04g33980.1	LOC_Os04g33980	SMXL strigolactone signal transducer	0.03	OrthoFinder output from all 47 species
LOC_Os08g15230.1	LOC_Os08g15230	SMXL strigolactone signal transducer	0.02	OrthoFinder output from all 47 species
MA_15290g0010	No alias	Protein SUPPRESSOR OF MAX2 1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_800170g0010	No alias	Protein SMAX1-like OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
Pir_g13621	No alias	strigolactone signal modulator *(SMXL) & original...	0.02	OrthoFinder output from all 47 species
Solyc07g006540.3.1	Solyc07g006540	SMXL strigolactone signal transducer	0.03	OrthoFinder output from all 47 species
Zm00001e008174_P001	Zm00001e008174	SMXL strigolactone signal transducer	0.03	OrthoFinder output from all 47 species
Zm00001e014748_P001	Zm00001e014748	SMXL strigolactone signal transducer	0.02	OrthoFinder output from all 47 species
Zm00001e022317_P001	Zm00001e022317	SMXL strigolactone signal transducer	0.02	OrthoFinder output from all 47 species
Zm00001e039910_P002	Zm00001e039910	SMXL strigolactone signal transducer	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0009452	7-methylguanosine RNA capping	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0030488	tRNA methylation	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	HCCA
MF	GO:0031625	ubiquitin protein ligase binding	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
CC	GO:0034708	methyltransferase complex	IEP	HCCA
BP	GO:0036260	RNA capping	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
CC	GO:0043527	tRNA methyltransferase complex	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051259	protein complex oligomerization	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	843	980
IPR004176	Clp_R_dom	129	166

External Links

No external refs found!

Pnu_g08821

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation