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  5. Pnu_g07336

Pnu_g07336


Description : component *(VPS36) of ESCRT-II complex & original description: none


Gene families : OG0005209 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005209_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g07336
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene51503.t1 Aspi01Gene51503 component *(VPS36) of ESCRT-II complex & original... 0.03 OrthoFinder output from all 47 species
LOC_Os01g59800.1 LOC_Os01g59800 component VPS36 of ESCRT-II complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0032266 phosphatidylinositol-3-phosphate binding IEA Interproscan
MF GO:0043130 ubiquitin binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR021648 GLUE_dom 14 101
IPR040608 Snf8/Vps36 190 414
No external refs found!