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  5. Pnu_g06418

Pnu_g06418 (ATHDA14, hda14)


Aliases : ATHDA14, hda14

Description : class-II histone deacetylase & original description: none


Gene families : OG0006068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g06418

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00054p00095350 ATHDA14, hda14,... Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
AT4G33470 ATHDA14, hda14 histone deacetylase 14 0.03 OrthoFinder output from all 47 species
Aev_g03857 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g53688 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17399 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38945 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g00560 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01026467001 ATHDA14, hda14 Chromatin organisation.histone modifications.histone... 0.05 OrthoFinder output from all 47 species
LOC_Os12g08220.1 ATHDA14, hda14,... class-II histone deacetylase 0.03 OrthoFinder output from all 47 species
MA_10435687g0010 ATHDA14, hda14 class-II histone deacetylase 0.02 OrthoFinder output from all 47 species
Msp_g18920 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10669 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Smo448239 ATHDA14, hda14 Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Tin_g11637 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 113 417
No external refs found!