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  5. Cba_g75996

Cba_g75996


Description : component *(CASC3) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002816_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g75996

Target Alias Description ECC score Gene Family Method Actions
Adi_g074719 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aev_g20399 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Als_g57002 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aob_g14440 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ceric.15G073300.1 Ceric.15G073300 component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ceric.26G046100.1 Ceric.26G046100 component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Dcu_g14577 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ehy_g30112 No alias component *(CASC3) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
GSVIVT01017130001 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
LOC_Os01g41190.2 LOC_Os01g41190 component CASC3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Lfl_g07367 No alias component *(CASC3) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Lfl_g38046 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
MA_10431738g0010 No alias component CASC3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Mp8g03760.1 No alias component CASC3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Ore_g37838 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Pir_g66513 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003000 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
CC GO:0035145 exon-exon junction complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018545 Btz_dom 137 217
No external refs found!