Lfl_g38046

Description : component *(CASC3) of RNA quality control Exon Junction complex & original description: none

Gene families : OG0002816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002816_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g38046

Target	Alias	Description	ECC score	Gene Family Method
AT1G80000	No alias	CASC3/Barentsz eIF4AIII binding	0.04	OrthoFinder output from all 47 species
Ala_g30604	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Aob_g14440	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Aspi01Gene11995.t2	Aspi01Gene11995	component *(CASC3) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Cba_g75996	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Ceric.15G073300.1	Ceric.15G073300	component *(CASC3) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Spa_g54006	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Zm00001e027824_P002	Zm00001e027824	component CASC3 of RNA quality control Exon Junction complex	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
CC	GO:0035145	exon-exon junction complex	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0008374	O-acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018545	Btz_dom	94	193

External Links

No external refs found!