Cba_g66997


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g66997

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Adi_g005487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g010668 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g012462 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g018742 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067253 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069020 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113425 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07321 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g33897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17191 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g34749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g37976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05247 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06904 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19233 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26323 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g32865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54924 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55158 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08270 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16831 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18871 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g39230 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene07941.t1 LPA66, Aspi01Gene07941 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19500.t1 Aspi01Gene19500 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57016.t1 Aspi01Gene57016 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64841.t1 Aspi01Gene64841 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026305 EMB2758 not classified & original description: CDS=1-1827 0.03 OrthoFinder output from all 47 species
Azfi_s0061.g035099 No alias not classified & original description: CDS=1-2613 0.03 OrthoFinder output from all 47 species
Azfi_s0063.g035318 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1986 0.03 OrthoFinder output from all 47 species
Cba_g07094 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19714 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g25572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45697 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g59978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67760 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76101 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g77980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G086700.1 Ceric.05G086700 not classified & original description: pacid=50579096... 0.03 OrthoFinder output from all 47 species
Ceric.39G046500.1 Ceric.39G046500 not classified & original description: pacid=50582543... 0.02 OrthoFinder output from all 47 species
Dac_g05682 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08317 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08967 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11021 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g16956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26743 No alias component *(MED19) of head module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Dcu_g26827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04422 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16483 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22519 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23651 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28518 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g34076 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
LOC_Os11g45410.1 LOC_Os11g45410 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Len_g01382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g02415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23208 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g37832 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g38675 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g41147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44140 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54471 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_23144g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Mp8g01790.1 No alias ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Msp_g04529 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g17452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g27922 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28692 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g38951 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g43943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g47208 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08417 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g22117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23619 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27639 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g43844 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16479 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01374 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12412 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g38691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63889 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30296 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07587 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g35865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61252 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010489 No alias not classified & original description: CDS=290-3358 0.02 OrthoFinder output from all 47 species
Sam_g19790 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22475 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g24777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36326 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50908 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51734 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g051480.1.1 OTP84, Solyc04g051480 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Tin_g03540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g38363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e021457_P001 CRR22, Zm00001e021457 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 139 187
IPR002885 Pentatricopeptide_repeat 214 239
IPR002885 Pentatricopeptide_repeat 242 269
No external refs found!