- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : PLATZ-type transcription factor & original description: none
Gene families : OG0000228 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000228_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cba_g52925 | |
| Cluster | HCCA: Cluster_82 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00022p00039680 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.PLATZ... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00059p00116150 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.PLATZ... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G21000 | No alias | PLATZ transcription factor family protein | 0.04 | OrthoFinder output from all 47 species | |
| AT1G32700 | No alias | PLATZ transcription factor family protein | 0.02 | OrthoFinder output from all 47 species | |
| AT4G17900 | No alias | PLATZ transcription factor family protein | 0.02 | OrthoFinder output from all 47 species | |
| Als_g04112 | No alias | PLATZ-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Als_g57143 | No alias | PLATZ-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene27904.t1 | Aspi01Gene27904 | PLATZ-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.04G033700.1 | Ceric.04G033700 | PLATZ-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g01466 | No alias | PLATZ-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g04318 | No alias | PLATZ-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01013149001 | No alias | RNA biosynthesis.transcriptional activation.PLATZ... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01024338001 | No alias | RNA biosynthesis.transcriptional activation.PLATZ... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g07650.1 | LOC_Os02g07650 | transcription factor (PLATZ) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g50120.1 | LOC_Os04g50120 | transcription factor (PLATZ) | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os06g41930.2 | LOC_Os06g41930 | transcription factor (PLATZ) | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g20268 | No alias | PLATZ-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g19030 | No alias | PLATZ-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g36725 | No alias | PLATZ-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Solyc06g061240.4.1 | Solyc06g061240 | transcription factor (PLATZ) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc08g005100.3.1 | Solyc08g005100 | transcription factor (PLATZ) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g15051 | No alias | PLATZ-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g21761 | No alias | PLATZ-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g30776 | No alias | PLATZ-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g53768 | No alias | PLATZ-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g06801 | No alias | PLATZ-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g09888 | No alias | PLATZ-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e007100_P003 | Zm00001e007100 | transcription factor (PLATZ) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e013748_P001 | Zm00001e013748 | transcription factor (PLATZ) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e013865_P001 | Zm00001e013865 | transcription factor (PLATZ) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003729 | mRNA binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| CC | GO:0005685 | U1 snRNP | IEP | HCCA |
| BP | GO:0006081 | cellular aldehyde metabolic process | IEP | HCCA |
| BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006376 | mRNA splice site selection | IEP | HCCA |
| BP | GO:0006644 | phospholipid metabolic process | IEP | HCCA |
| BP | GO:0007034 | vacuolar transport | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| MF | GO:0008194 | UDP-glycosyltransferase activity | IEP | HCCA |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| BP | GO:0008610 | lipid biosynthetic process | IEP | HCCA |
| BP | GO:0008654 | phospholipid biosynthetic process | IEP | HCCA |
| BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | HCCA |
| MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEP | HCCA |
| MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | HCCA |
| MF | GO:0016726 | oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | HCCA |
| BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | HCCA |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | HCCA |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0044255 | cellular lipid metabolic process | IEP | HCCA |
| BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0050992 | dimethylallyl diphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0050993 | dimethylallyl diphosphate metabolic process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0051213 | dioxygenase activity | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| MF | GO:0051745 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
| MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
| CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR006734 | PLATZ | 79 | 149 |
| No external refs found! |