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  5. Lfl_g35891

Lfl_g35891 (SDG30, ATX2)


Aliases : SDG30, ATX2

Description : class-III histone methyltransferase *(Trx) & original description: none


Gene families : OG0004303 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004303_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g35891

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00115800 SDG30, ATX2,... Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
AT1G05830 SDG30, ATX2 trithorax-like protein 2 0.04 OrthoFinder output from all 47 species
Adi_g013424 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Aev_g04886 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Aev_g32400 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Ala_g02683 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Als_g15203 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Als_g32921 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene13213.t1 SDG30, ATX2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g38525 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Ceric.20G024500.1 SDG30, ATX2,... class-III histone methyltransferase *(Trx) & original... 0.1 OrthoFinder output from all 47 species
Dcu_g05840 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Gb_27375 ATX1, SDG27 class III/Trithorax histone methyltransferase component... 0.03 OrthoFinder output from all 47 species
LOC_Os09g04890.1 SDG30, ATX2,... Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Mp7g16780.1 SDG30, ATX2 Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Msp_g13971 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Ore_g34686 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Pir_g12237 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Spa_g09107 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Tin_g22080 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Zm00001e033644_P001 SDG30, ATX2,... class III/Trithorax histone methyltransferase component... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003972 RNA ligase (ATP) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008452 RNA ligase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001214 SET_dom 1015 1121
IPR003889 FYrich_C 569 649
IPR003888 FYrich_N 510 560
IPR000313 PWWP_dom 367 453
No external refs found!