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Heatmap: Cluster_39 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
-0.29 -0.08 -0.0 0.15 0.06 0.19 -0.22 -0.11 -0.23 -0.34 -0.29 -0.43 -0.07 0.9 0.96 0.14 -0.24 -0.87 -0.21 -0.41 -1.34 -2.41 -0.22 -0.35 0.84 0.37 0.9 1.14 -0.44 -0.37 -0.85 -0.67
-0.11 0.16 0.03 0.33 0.33 0.31 0.17 0.18 0.01 -0.26 -0.27 -0.33 0.1 1.28 0.51 -0.12 -0.27 -0.86 -0.64 -1.05 -1.51 -2.09 -0.47 -0.55 1.03 0.18 0.95 0.94 -0.71 -0.65 -1.11 -1.4
0.25 -0.86 -1.12 -0.96 -0.12 -0.33 -0.87 0.59 0.26 0.52 0.8 0.69 0.59 1.22 1.04 0.74 -1.29 -2.78 -0.18 -6.27 -2.6 - -1.51 -1.1 -2.87 1.23 1.13 1.17 -0.59 -0.41 -0.55 -1.0
-0.31 -0.37 -0.29 0.0 0.09 0.05 0.22 0.41 0.24 0.28 0.22 0.18 0.06 0.36 1.02 -0.03 -0.54 -1.17 -0.17 -2.15 -2.15 -0.4 -0.3 -0.39 0.68 0.51 0.76 0.79 -0.42 -0.25 -0.71 -0.91
Smo114371 (MSH3)
 0.29 0.31 0.13 0.51 0.94 0.62 0.53 0.59 0.74 0.37 0.08 0.1 0.04 -0.2 0.35 -0.29 -1.1 -3.09 -0.59 -5.52 - -1.17 -0.83 -0.57 0.66 0.72 1.1 0.92 -1.64 -1.18 -1.91 -1.76
-0.12 0.04 0.29 0.55 0.58 0.5 0.25 0.5 0.57 0.53 0.52 0.14 -0.77 0.5 0.91 -0.46 -1.41 -4.04 -1.47 -0.51 -1.58 -2.25 -1.62 -1.88 1.1 1.14 0.96 0.79 -1.55 -1.3 -2.37 -2.51
0.61 0.51 0.39 -0.1 0.03 0.15 0.08 1.03 0.55 0.65 1.0 0.95 - 1.62 -1.53 -5.06 -3.75 - - - -4.3 - -4.71 -6.93 -2.62 2.11 1.76 1.59 -5.32 -4.22 -5.85 -4.92
-0.34 -0.25 -0.24 0.22 0.33 0.3 0.3 0.24 -0.05 -0.14 -0.16 -0.35 -0.2 0.42 0.77 0.13 -0.51 -0.69 -0.37 -2.78 -1.99 -1.61 -0.26 -0.1 1.07 0.5 1.15 1.01 -0.32 -0.25 -1.05 -1.18
Smo140217 (emb1027)
 0.08 0.01 -0.16 0.13 0.14 0.2 0.34 0.55 0.47 0.43 0.24 0.26 -0.73 -0.61 0.72 -0.79 -0.82 -1.05 -0.26 -0.67 -1.37 -0.8 -0.86 -0.72 0.29 1.19 0.92 0.74 -0.6 -0.55 -0.72 -0.52
Smo165253 (FUS8)
 0.05 -0.03 -0.2 0.22 0.19 0.21 0.12 0.31 0.31 0.2 0.11 0.08 0.2 0.75 0.95 0.32 -0.48 -0.99 0.16 -1.72 -1.96 -4.5 -0.34 -0.21 0.28 0.11 0.49 0.39 -0.41 -0.34 -0.35 -0.25
-0.38 -0.13 0.05 0.16 0.18 0.22 0.19 0.04 0.13 -0.18 -0.25 -0.27 -0.13 1.08 1.26 -0.37 -0.22 -0.23 -0.73 -0.75 0.02 -0.24 -0.41 -0.76 0.32 -0.85 0.63 0.69 -0.45 -0.19 -0.75 -0.73
Smo167575 (CSN3)
 -0.1 -0.13 -0.01 0.02 0.02 0.05 0.14 0.18 0.19 0.2 0.17 -0.01 -0.11 0.53 1.06 -0.07 -0.69 -0.89 0.16 -0.54 -0.97 -0.51 -0.33 -0.19 0.34 0.58 0.35 0.38 -0.65 -0.55 -0.48 -0.31
Smo167999 (GlcNAc1pUT2)
 0.23 0.11 0.0 0.24 0.16 0.09 0.05 0.16 0.2 0.05 0.0 -0.06 -0.03 0.92 0.85 0.13 -0.58 -0.84 -0.36 -1.67 -1.18 -3.18 -0.01 -0.1 0.49 0.18 0.63 0.53 -0.52 -0.35 -0.5 -0.33
Smo170784 (SYTF)
 0.05 0.05 0.17 0.18 0.23 0.22 -0.06 0.3 0.21 0.1 0.17 -0.03 0.53 0.28 0.24 0.28 -0.91 -1.2 0.12 -3.7 -4.07 -3.32 0.06 0.29 -0.04 0.78 0.84 1.04 -0.43 -0.36 -0.86 -0.81
0.04 -0.2 -0.21 0.05 0.12 0.07 0.12 0.21 0.18 0.35 0.07 -0.16 0.23 0.39 0.74 0.22 -0.45 -0.75 0.05 -1.56 -1.79 -1.47 -0.45 -0.27 0.65 0.31 0.69 0.75 -0.26 -0.1 -0.67 -0.42
-0.18 -0.17 -0.23 0.26 0.18 0.19 0.25 0.38 0.29 0.14 0.02 0.01 -0.15 0.5 1.25 -0.21 -1.32 -1.62 -0.14 -0.6 -0.4 -0.54 -0.9 -0.58 0.79 0.82 0.9 0.58 -1.18 -0.88 -1.52 -1.4
0.44 0.39 0.3 0.53 0.2 0.35 0.12 0.62 0.74 0.94 0.89 0.77 -1.3 1.05 1.2 -1.25 -1.74 -3.43 -1.13 -5.17 -2.08 -2.91 -1.82 -1.72 -0.85 1.35 0.64 0.68 -1.63 -1.63 -1.85 -2.0
Smo230105 (LCB1)
 0.01 -0.01 -0.02 0.23 0.28 0.14 0.02 0.26 -0.01 0.02 -0.08 -0.17 0.16 0.79 1.04 0.4 -0.51 -0.64 0.05 -1.13 -1.1 -2.52 -0.12 -0.06 0.36 0.22 0.37 0.48 -0.55 -0.52 -0.57 -0.47
Smo269334 (CPA)
 -0.61 -0.26 -0.03 0.04 0.2 0.36 0.4 0.26 -0.1 -0.17 -0.24 -0.46 -0.07 0.92 1.2 -0.13 -0.46 -0.84 -0.03 -0.63 -0.39 -0.81 -0.27 -0.3 0.47 0.09 0.8 0.79 -0.77 -0.63 -0.97 -0.88
Smo27355 (ACN1)
 0.71 0.73 -0.12 0.43 -0.35 1.2 0.43 0.45 -0.06 1.18 0.99 -0.31 - 0.78 1.02 -3.43 -2.21 - - - - - - -1.56 -0.2 2.19 1.8 0.28 - -3.55 - -
0.53 0.47 0.25 0.78 0.84 0.69 -0.05 0.72 0.5 0.06 0.61 0.21 -0.52 1.71 1.32 -0.81 -2.16 -5.79 -1.16 -2.22 -4.1 -3.17 -1.91 -2.31 -1.22 0.89 0.96 0.84 -3.05 -2.36 -2.73 -3.9
Smo406168 (MGP2)
 0.33 0.37 0.09 0.34 0.56 0.47 0.45 0.6 0.85 0.39 0.69 0.49 -0.03 1.02 0.86 -0.19 -1.82 -2.09 -1.33 -2.33 -2.17 -2.13 -0.43 -0.39 -0.85 1.07 0.4 0.47 -1.69 -1.5 -2.14 -2.23
0.27 -0.04 -0.0 0.35 0.62 0.31 0.58 0.69 0.72 0.76 0.52 0.5 -1.45 0.4 0.74 -1.0 -1.41 -1.76 -0.97 -1.12 -0.56 -2.17 -1.64 -1.5 0.61 1.12 0.48 0.71 -1.34 -0.93 -1.22 -1.62
0.3 0.21 0.07 0.14 0.28 0.29 0.36 0.27 0.34 0.33 -0.02 0.14 -0.55 -0.34 0.3 -0.53 -0.68 -1.68 -0.24 -1.43 -0.28 -3.03 -0.63 -0.59 0.72 0.53 1.15 1.05 -0.61 -0.68 -0.51 -0.43
Smo409623 (REF1)
 0.6 0.58 -0.15 0.04 0.67 0.3 0.19 0.8 1.1 0.24 0.59 0.33 -5.51 1.42 -0.25 - - - -5.65 - -0.96 - - -4.72 - 1.97 2.22 1.38 - - - -
-0.56 -0.15 -0.07 0.25 0.52 0.22 0.46 0.33 0.24 0.02 -0.06 -0.26 0.36 0.31 1.06 0.77 -0.95 -1.35 -0.09 -3.98 -1.87 -1.23 -1.28 -1.02 -0.26 0.53 0.96 1.09 -0.47 -0.26 -0.63 -0.55
-0.56 -0.18 0.17 0.32 0.31 0.26 0.53 0.38 0.34 0.2 0.14 -0.18 0.16 0.29 0.76 0.23 -1.09 -1.51 -0.44 -1.29 -1.77 -1.97 -0.42 -0.08 0.1 1.05 0.77 0.92 -0.71 -0.53 -1.01 -0.86
Smo410502 (DPL1)
 -0.16 0.07 0.08 0.22 0.29 0.25 0.05 0.18 0.01 -0.09 -0.14 -0.21 -0.7 0.56 0.69 0.1 -0.39 -0.62 0.43 -4.81 -2.2 -2.32 -0.51 -0.66 0.74 1.12 1.02 1.04 -0.51 -0.43 -1.11 -1.4
Smo411162 (TT8)
 0.52 0.42 -0.06 0.13 -0.47 0.37 0.44 0.64 0.59 0.73 0.6 0.43 -2.57 0.26 0.53 -1.72 -1.08 -4.36 -1.37 -3.51 0.15 -1.65 -2.13 -2.74 1.15 1.65 1.21 0.72 -1.55 -1.53 -2.89 -2.57
0.35 0.55 0.9 0.54 0.8 0.58 0.37 0.64 0.51 0.41 0.68 0.46 -1.13 1.22 1.62 -0.9 -1.47 -1.77 -1.3 -6.49 -4.95 - -1.26 -1.03 -2.86 0.42 0.57 0.74 -1.86 -1.56 -2.06 -2.16
-0.31 0.1 -0.41 -0.0 -0.6 0.17 -0.03 -0.19 0.03 0.36 -0.19 -0.23 -0.37 1.56 1.25 -0.84 -1.88 -2.23 -0.04 -6.97 -1.18 -3.61 -1.06 -1.16 1.12 0.99 1.43 1.45 -1.34 -1.42 -1.33 -1.39
Smo421784 (IIL1)
 -0.03 -0.23 -0.3 0.07 0.22 0.76 0.73 0.74 0.8 0.29 0.46 0.22 -2.28 0.7 1.11 -1.62 -2.46 -3.89 -1.88 -2.28 -1.38 -3.17 -2.79 -2.0 1.16 1.31 1.39 1.48 -2.75 -2.62 -3.13 -2.94
0.14 0.13 0.65 0.62 0.88 0.05 0.82 0.62 0.45 1.1 0.14 0.5 -0.79 1.65 2.06 0.59 -2.54 -4.38 -2.84 - - - -3.04 -2.13 -1.42 0.53 -0.61 0.15 -2.52 -1.85 -2.07 -3.47
0.15 0.29 0.69 0.79 0.85 0.72 0.76 0.72 0.65 1.03 -0.14 0.04 -2.39 0.15 1.34 -2.24 -1.83 -1.53 -1.6 - - -4.92 -3.36 -2.35 -1.86 1.22 1.56 1.21 -2.25 -2.36 -2.47 -2.29
0.3 0.36 0.26 0.51 0.65 0.47 0.41 0.46 0.47 0.41 0.33 0.29 0.01 1.02 0.72 -0.21 -1.57 -4.46 -0.43 -1.03 -2.64 -2.62 -1.04 -0.75 0.11 0.89 0.74 0.72 -1.61 -1.6 -1.8 -1.96
0.1 0.31 0.43 0.58 0.33 0.58 0.39 0.36 0.65 0.54 0.76 0.3 -0.7 1.0 0.71 -0.8 -2.49 -4.51 -0.99 -3.25 -3.04 -1.83 -1.7 -1.46 -0.85 1.68 1.28 1.0 -2.39 -2.45 -2.68 -2.89
0.12 0.1 -0.17 0.1 0.26 0.26 0.02 0.3 0.01 0.14 0.12 0.03 0.11 0.36 0.3 0.22 -0.69 -0.91 0.03 -2.33 -1.26 -1.88 -0.21 0.04 0.42 0.85 0.82 0.81 -0.64 -0.53 -0.64 -0.54
0.23 -0.05 -0.21 0.62 0.12 0.28 1.0 0.89 1.35 -0.45 0.68 0.81 -2.25 1.33 1.13 -2.62 -3.52 -2.53 -3.19 - - - -5.24 -2.65 -3.15 1.72 1.37 1.48 -5.18 -3.18 - -3.28
Smo425292 (TPK1)
 0.58 0.64 -1.37 0.46 -0.96 -0.32 0.61 0.42 1.33 0.8 0.93 1.03 -0.33 1.01 1.23 0.1 -1.52 -5.71 -0.66 -4.04 - -4.28 -1.44 -0.7 - 0.97 0.77 0.57 -1.33 -1.06 -2.23 -1.99
0.26 0.56 -0.07 0.64 0.57 0.77 1.21 0.72 0.33 1.19 0.42 0.77 -1.91 1.85 1.77 -0.18 -3.96 -4.37 -2.86 - - - -3.25 -2.99 -3.6 0.37 0.42 0.48 -3.14 -3.44 -3.83 -4.13
0.53 0.21 -0.15 0.19 0.1 0.25 -0.22 0.28 0.49 0.53 0.65 0.73 0.86 1.18 1.13 0.87 -2.02 -5.14 -1.39 -2.87 -1.38 -3.19 -0.95 -0.95 -0.67 0.91 0.37 0.32 -1.69 -1.51 -1.39 -1.18
Smo429828 (CARA)
 0.2 0.21 0.01 0.17 0.45 0.28 0.35 0.1 0.04 0.24 0.29 0.21 0.65 1.16 0.94 0.41 -0.93 -2.08 -0.08 -1.79 -1.08 -3.11 -0.59 -0.21 0.63 0.18 0.43 0.37 -0.9 -0.77 -2.1 -2.18
0.16 -0.86 0.44 0.17 0.67 0.26 0.91 1.19 0.96 1.35 1.51 0.65 - 0.34 1.02 - - - - - - - - -4.85 - 1.94 1.62 0.78 - - - -4.78
0.46 0.76 0.56 0.55 0.44 0.24 0.49 0.37 0.46 0.29 0.26 0.29 0.04 1.06 1.13 0.15 -0.9 -1.45 -0.62 -3.01 -4.19 -3.49 -1.22 -1.16 -2.47 0.53 0.53 0.86 -0.9 -0.61 -1.97 -1.75
Smo440989 (BLI)
 0.47 0.3 0.23 0.24 0.32 0.27 -0.05 0.08 0.18 0.02 0.19 -0.06 0.19 0.41 0.17 0.37 -0.51 -0.98 -0.01 -2.99 -1.63 -2.28 -0.05 0.05 0.06 0.85 0.64 0.73 -0.57 -0.41 -0.84 -0.92
-0.08 -0.03 0.29 0.3 0.27 0.3 0.31 0.4 0.41 0.26 0.29 -0.11 -0.35 0.28 0.83 -0.44 -0.83 -1.21 -1.04 -0.87 -1.65 -0.85 -0.22 -0.05 0.21 0.36 0.94 1.2 -0.86 -0.68 -1.21 -1.13
0.23 0.24 0.11 0.19 0.08 0.09 0.02 0.08 0.1 0.18 0.1 0.12 -0.06 0.29 0.2 0.2 -0.57 -1.02 0.17 -1.45 -0.9 -1.84 -0.44 -0.32 0.17 0.85 0.7 0.86 -0.25 -0.16 -0.6 -0.73
0.26 0.46 0.37 0.43 0.46 0.41 0.43 0.45 0.13 0.28 0.09 0.07 -0.15 -0.19 0.16 -0.25 -0.93 -9.57 -0.16 -1.92 -1.02 -0.67 -0.47 -0.41 0.57 0.55 1.04 0.92 -1.19 -1.21 -0.8 -0.76
0.2 0.3 0.08 0.17 0.36 0.3 0.14 0.57 0.25 0.14 0.21 0.07 -0.11 0.23 0.33 0.07 -0.55 -2.18 -0.14 -0.64 -1.57 -1.01 -0.29 -0.14 0.02 0.53 0.65 0.46 -0.51 -0.41 -0.37 -0.33
-0.09 -0.04 -0.37 0.14 0.32 0.33 0.24 0.63 0.68 0.46 0.41 0.22 -0.01 -0.77 0.28 -0.07 -0.8 -4.56 -0.27 -1.29 -1.15 -1.47 -0.52 -0.29 0.22 1.26 1.0 0.66 -0.63 -0.57 -1.09 -0.59
-0.42 0.09 0.16 0.4 0.17 0.17 0.24 0.06 -0.08 -0.37 -0.27 -0.5 0.02 0.84 0.25 0.22 -0.0 -0.55 -0.14 -2.88 -1.74 -4.5 -0.08 -0.12 1.02 -0.06 0.99 1.29 -0.31 -0.26 -1.16 -1.21
Smo75640 (AFH14)
 -0.14 0.21 0.61 0.53 1.0 0.66 0.4 0.62 0.63 0.53 0.48 0.29 -1.83 -0.01 0.75 -1.39 -1.32 -2.07 -1.59 -6.87 -4.72 - -1.23 -1.32 0.77 1.04 1.03 1.46 -1.53 -1.53 -1.78 -2.2
-0.16 0.03 0.03 0.37 0.46 0.44 0.42 0.28 -0.0 -0.03 -0.1 0.02 0.4 0.8 0.85 0.07 -0.21 -0.83 -0.44 -3.82 -1.79 -1.8 -0.76 -0.97 0.63 0.08 0.87 0.84 -0.37 -0.23 -1.18 -1.09
-0.08 0.07 0.13 0.19 -0.08 0.27 0.1 0.25 0.06 0.05 -0.0 0.07 -0.62 0.41 0.92 -0.5 -0.77 -0.73 -0.38 -1.56 -0.88 -2.59 -0.67 -0.29 0.91 0.67 1.19 1.04 -0.8 -0.65 -0.81 -0.66
-0.48 -0.37 -0.16 -0.26 0.16 -0.07 0.18 0.24 0.32 0.29 0.04 -0.13 -0.06 0.36 1.05 0.05 -0.74 -0.91 -0.11 -1.69 -1.95 -2.35 -0.52 -0.48 0.83 0.94 1.12 1.1 -0.48 -0.52 -0.95 -1.13
Smo88496 (MAP2B)
 -0.05 0.06 -0.01 0.13 0.18 0.2 0.2 0.24 0.18 0.24 -0.02 0.13 -0.28 0.27 0.51 -0.2 -0.95 -1.45 -0.28 -1.3 -1.21 -1.04 -0.49 -0.21 0.96 0.7 1.09 1.0 -0.83 -0.77 -0.93 -0.77
0.41 0.2 0.25 0.33 0.26 0.44 0.22 0.21 0.29 0.18 0.14 -0.0 -0.66 -0.21 0.55 -0.42 -0.34 -0.66 -0.05 -1.33 -0.98 -1.67 -0.58 -0.51 0.29 0.1 0.9 0.98 -0.32 -0.25 -0.7 -0.6
0.16 0.25 0.07 0.26 0.25 0.13 0.03 0.31 0.36 0.24 0.24 0.16 0.31 0.51 0.23 0.52 -0.66 -1.02 -0.39 -0.57 -1.61 -0.31 -0.35 -0.31 0.32 0.37 0.32 0.17 -0.53 -0.45 -0.76 -0.64
Smo98535 (MTN1)
 -0.68 -0.45 -0.06 0.11 0.28 0.34 0.17 0.12 -0.04 -0.45 -0.33 -0.76 0.08 0.86 1.15 0.04 -0.01 -0.5 0.03 0.03 -1.01 -0.68 0.3 0.3 0.05 -0.13 0.41 0.56 -0.31 -0.15 -1.08 -1.12

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.