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Heatmap: Cluster_39 (HCCA)

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Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
29.19 33.77 35.65 39.62 37.23 40.83 30.64 33.18 30.5 28.12 29.12 26.57 34.04 66.52 69.3 39.31 30.25 19.54 30.77 26.84 14.15 6.7 30.62 28.05 64.12 46.27 66.82 78.87 26.26 27.58 19.8 22.44
71.82 86.48 79.47 97.5 97.51 95.92 87.47 87.92 78.4 64.89 64.14 61.53 82.95 188.45 110.82 71.26 64.25 42.88 49.85 37.38 27.27 18.28 55.89 52.84 158.83 88.04 150.29 148.5 47.5 49.34 35.99 29.46
2.95 1.36 1.14 1.27 2.27 1.97 1.35 3.71 2.96 3.54 4.32 3.99 3.73 5.77 5.1 4.14 1.01 0.36 2.19 0.03 0.41 0.0 0.87 1.15 0.34 5.8 5.42 5.55 1.64 1.86 1.69 1.23
18.9 18.13 19.14 23.38 24.83 24.17 27.15 30.99 27.52 28.47 27.17 26.56 24.3 29.96 47.42 22.92 16.06 10.36 20.76 5.26 5.28 17.74 19.01 17.89 37.33 33.3 39.49 40.43 17.44 19.7 14.33 12.42
Smo114371 (MSH3)
 3.23 3.26 2.89 3.76 5.06 4.07 3.81 3.96 4.4 3.42 2.8 2.82 2.71 2.3 3.35 2.17 1.23 0.31 1.75 0.06 0.0 1.17 1.48 1.78 4.17 4.36 5.64 5.0 0.85 1.17 0.7 0.78
10.92 12.21 14.47 17.36 17.73 16.81 14.15 16.75 17.55 17.16 16.97 13.11 6.95 16.74 22.23 8.6 4.46 0.72 4.29 8.34 3.97 2.5 3.86 3.22 25.49 26.21 23.07 20.44 4.06 4.83 2.29 2.08
12.06 11.2 10.37 7.35 8.06 8.78 8.31 16.1 11.56 12.39 15.74 15.25 0.0 24.17 2.74 0.24 0.59 0.0 0.0 0.0 0.4 0.0 0.3 0.06 1.28 34.03 26.76 23.74 0.2 0.42 0.14 0.26
17.62 18.73 18.94 25.95 28.07 27.43 27.47 26.41 21.52 20.3 19.94 17.5 19.38 29.84 37.96 24.42 15.71 13.87 17.21 3.25 5.6 7.3 18.58 20.76 46.97 31.5 49.61 44.91 17.86 18.77 10.75 9.83
Smo140217 (emb1027)
 100.58 95.74 85.22 104.12 104.98 108.95 120.45 139.07 131.45 128.13 111.94 113.68 57.44 62.27 156.76 54.81 53.78 45.89 79.51 59.65 36.84 54.46 52.24 57.83 116.0 216.75 179.8 158.84 62.58 64.98 57.52 66.37
Smo165253 (FUS8)
 57.41 54.22 48.29 64.73 63.39 64.23 60.3 68.72 68.78 63.62 59.93 58.68 63.88 93.4 107.26 69.21 39.87 27.91 61.93 16.84 14.28 2.46 43.95 48.09 67.33 59.64 77.97 72.5 41.61 43.8 43.46 46.72
39.79 47.33 53.4 57.61 58.41 60.08 58.96 53.03 56.62 45.52 43.4 42.87 47.16 108.88 123.28 40.09 44.34 43.95 31.08 30.74 52.22 43.64 38.81 30.5 64.28 28.63 79.69 83.49 37.8 45.2 30.61 31.08
Smo167575 (CSN3)
 32.64 31.96 34.65 35.51 35.34 36.21 38.39 39.46 39.87 40.08 39.4 34.69 32.27 50.58 72.96 33.33 21.67 18.88 38.91 24.0 17.84 24.5 27.82 30.68 44.33 52.11 44.64 45.38 22.22 23.89 25.07 28.07
Smo167999 (GlcNAc1pUT2)
 67.94 62.26 57.87 68.05 64.76 61.67 59.9 64.74 66.48 59.81 57.97 55.28 56.67 109.26 103.95 63.24 38.68 32.35 44.99 18.2 25.48 6.4 57.55 54.08 81.15 65.67 89.22 83.29 40.41 45.41 41.01 45.84
Smo170784 (SYTF)
 29.06 28.98 31.53 31.61 32.8 32.7 26.85 34.48 32.48 30.09 31.57 27.4 40.54 34.08 33.09 33.96 14.93 12.21 30.49 2.16 1.67 2.8 29.24 34.12 27.19 48.06 50.02 57.55 20.85 21.87 15.43 15.92
29.39 24.95 24.77 29.56 31.14 30.12 30.99 33.05 32.46 36.35 30.08 25.63 33.51 37.46 47.86 33.34 20.89 17.0 29.57 9.71 8.3 10.33 20.96 23.8 44.77 35.53 46.12 48.11 23.98 26.75 17.93 21.33
25.8 26.0 24.93 35.06 32.99 33.35 34.74 37.95 35.64 32.1 29.63 29.46 26.4 41.26 69.29 25.16 11.7 9.49 26.51 19.21 22.11 20.11 15.67 19.57 50.46 51.72 54.39 43.78 12.87 15.84 10.19 11.06
19.11 18.43 17.34 20.33 16.26 18.02 15.31 21.7 23.54 27.1 26.14 24.07 5.75 29.25 32.39 5.93 4.23 1.31 6.44 0.39 3.33 1.88 3.99 4.28 7.85 36.03 21.93 22.53 4.55 4.54 3.9 3.53
Smo230105 (LCB1)
 36.91 36.41 36.34 43.01 44.77 40.37 37.18 43.87 36.49 37.37 34.71 32.65 41.2 63.41 75.49 48.44 25.73 23.57 38.1 16.82 17.19 6.41 33.76 35.2 47.07 42.74 47.38 51.42 25.13 25.68 24.77 26.52
Smo269334 (CPA)
 75.22 95.67 112.84 117.69 132.23 147.66 151.86 137.91 107.06 102.37 97.47 83.73 109.42 217.02 263.72 105.1 83.5 64.08 112.25 74.11 87.55 65.64 94.92 93.23 158.87 121.84 199.87 199.1 67.46 74.39 58.42 62.3
Smo27355 (ACN1)
 1.8 1.81 1.01 1.48 0.86 2.52 1.47 1.49 1.05 2.48 2.18 0.88 0.0 1.88 2.22 0.1 0.24 0.0 0.0 0.0 0.0 0.0 0.0 0.37 0.96 4.99 3.82 1.32 0.0 0.09 0.0 0.0
5.08 4.87 4.18 6.05 6.3 5.67 3.39 5.79 4.98 3.68 5.36 4.06 2.46 11.48 8.76 2.0 0.79 0.06 1.57 0.76 0.21 0.39 0.94 0.71 1.51 6.51 6.84 6.3 0.42 0.69 0.53 0.24
Smo406168 (MGP2)
 16.09 16.59 13.58 16.23 18.94 17.78 17.5 19.38 23.1 16.73 20.64 18.04 12.51 26.05 23.18 11.19 3.63 3.02 5.11 2.54 2.84 2.92 9.51 9.75 7.09 26.92 16.94 17.79 3.98 4.52 2.91 2.74
21.94 17.69 18.18 23.16 28.08 22.59 27.17 29.41 30.0 30.84 26.13 25.73 6.67 24.02 30.51 9.11 6.85 5.36 9.28 8.36 12.39 4.04 5.84 6.45 27.78 39.56 25.37 29.72 7.19 9.55 7.84 5.94
27.67 26.0 23.6 24.78 27.33 27.52 28.89 27.17 28.4 28.21 22.15 24.82 15.37 17.82 27.72 15.61 14.05 7.04 18.99 8.33 18.55 2.76 14.57 14.9 37.13 32.5 49.78 46.66 14.7 13.99 15.79 16.66
Smo409623 (REF1)
 3.99 3.93 2.37 2.71 4.19 3.23 3.0 4.6 5.63 3.1 3.96 3.31 0.06 7.03 2.21 0.0 0.0 0.0 0.05 0.0 1.35 0.0 0.0 0.1 0.0 10.34 12.26 6.84 0.0 0.0 0.0 0.0
12.13 16.12 16.95 21.14 25.53 20.83 24.48 22.35 21.01 18.02 17.09 14.89 22.89 22.03 37.19 30.38 9.25 6.99 16.76 1.13 4.88 7.61 7.32 8.81 14.9 25.73 34.73 37.88 12.91 14.87 11.54 12.15
17.14 22.37 28.54 31.6 31.44 30.4 36.5 32.95 31.99 29.21 27.84 22.41 28.31 30.92 42.93 29.64 11.93 8.9 18.63 10.36 7.41 6.45 18.89 23.93 27.1 52.66 43.08 47.83 15.53 17.58 12.63 13.95
Smo410502 (DPL1)
 16.37 19.2 19.36 21.3 22.42 21.77 18.88 20.79 18.38 17.22 16.56 15.87 11.24 26.92 29.44 19.55 14.0 11.89 24.64 0.65 3.99 3.66 12.83 11.55 30.64 39.73 37.08 37.71 12.86 13.56 8.49 6.94
Smo411162 (TT8)
 2.22 2.07 1.49 1.69 1.12 2.0 2.1 2.41 2.34 2.57 2.35 2.09 0.26 1.86 2.23 0.47 0.74 0.08 0.6 0.14 1.72 0.49 0.35 0.23 3.44 4.87 3.58 2.56 0.53 0.54 0.21 0.26
4.07 4.66 5.96 4.64 5.55 4.77 4.11 4.98 4.56 4.25 5.12 4.39 1.46 7.46 9.82 1.71 1.15 0.94 1.3 0.04 0.1 0.0 1.33 1.56 0.44 4.29 4.73 5.33 0.88 1.08 0.77 0.71
2.48 3.3 2.32 3.07 2.02 3.46 3.02 2.68 3.13 3.93 2.69 2.62 2.38 9.05 7.3 1.71 0.83 0.65 2.98 0.02 1.35 0.25 1.47 1.38 6.66 6.08 8.28 8.36 1.21 1.14 1.22 1.17
Smo421784 (IIL1)
 8.0 6.92 6.61 8.54 9.49 13.84 13.51 13.59 14.16 9.97 11.21 9.49 1.68 13.2 17.64 2.66 1.48 0.55 2.21 1.67 3.13 0.91 1.18 2.04 18.26 20.13 21.4 22.72 1.21 1.32 0.93 1.06
2.29 2.27 3.26 3.18 3.81 2.14 3.66 3.2 2.84 4.45 2.29 2.94 1.2 6.5 8.66 3.12 0.36 0.1 0.29 0.0 0.0 0.0 0.25 0.47 0.77 2.98 1.36 2.3 0.36 0.58 0.49 0.19
2.78 3.07 4.04 4.33 4.51 4.14 4.25 4.12 3.94 5.1 2.28 2.58 0.48 2.79 6.34 0.53 0.71 0.87 0.83 0.0 0.0 0.08 0.24 0.49 0.69 5.85 7.36 5.8 0.53 0.49 0.45 0.51
55.02 57.54 53.7 63.67 69.98 61.88 59.47 61.67 61.9 59.42 56.34 54.88 45.15 90.93 73.55 38.65 15.04 2.03 33.1 21.9 7.2 7.28 21.75 26.59 48.35 82.99 74.56 73.45 14.64 14.72 12.85 11.49
13.08 15.17 16.43 18.27 15.38 18.26 16.01 15.71 19.2 17.72 20.69 15.01 7.53 24.41 19.99 7.03 2.17 0.54 6.14 1.28 1.49 3.44 3.76 4.43 6.77 39.16 29.69 24.45 2.33 2.24 1.91 1.65
41.52 40.89 33.94 40.85 45.74 45.9 38.86 46.96 38.42 42.2 41.46 39.16 41.38 49.07 47.25 44.57 23.68 20.31 39.11 7.59 15.93 10.39 32.95 39.39 51.15 68.75 67.62 67.02 24.53 26.46 24.63 26.28
1.11 0.91 0.82 1.46 1.03 1.15 1.89 1.76 2.41 0.69 1.52 1.65 0.2 2.37 2.08 0.15 0.08 0.16 0.1 0.0 0.0 0.0 0.02 0.15 0.11 3.1 2.45 2.64 0.03 0.1 0.0 0.1
Smo425292 (TPK1)
 3.51 3.66 0.91 3.23 1.21 1.88 3.6 3.16 5.91 4.1 4.47 4.82 1.87 4.74 5.5 2.52 0.82 0.04 1.49 0.14 0.0 0.12 0.87 1.45 0.0 4.59 4.02 3.49 0.94 1.13 0.5 0.59
1.94 2.38 1.54 2.52 2.41 2.77 3.76 2.66 2.04 3.69 2.17 2.76 0.43 5.85 5.55 1.43 0.1 0.08 0.22 0.0 0.0 0.0 0.17 0.2 0.13 2.1 2.16 2.26 0.18 0.15 0.11 0.09
9.34 7.47 5.82 7.4 6.95 7.7 5.54 7.86 9.08 9.34 10.19 10.75 11.71 14.7 14.13 11.84 1.6 0.18 2.47 0.88 2.48 0.71 3.34 3.35 4.07 12.17 8.35 8.06 2.0 2.27 2.47 2.86
Smo429828 (CARA)
 27.41 27.61 24.02 26.72 32.57 28.95 30.28 25.47 24.41 28.06 29.04 27.53 37.39 53.21 45.64 31.61 12.52 5.63 22.52 6.87 11.27 2.76 15.81 20.63 36.95 26.92 32.02 30.74 12.74 13.93 5.56 5.24
2.77 1.37 3.34 2.79 3.92 2.96 4.64 5.65 4.81 6.31 7.05 3.88 0.0 3.13 5.01 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.09 0.0 9.46 7.61 4.24 0.0 0.0 0.0 0.09
106.88 131.09 114.3 113.73 105.09 91.41 108.77 100.5 106.55 95.09 93.25 94.99 79.96 162.26 170.5 86.32 41.69 28.36 50.59 9.65 4.24 6.91 33.29 34.77 14.04 112.38 111.89 140.83 41.65 51.03 19.82 23.09
Smo440989 (BLI)
 94.85 84.19 80.24 80.99 85.79 82.53 66.42 72.4 77.83 69.34 78.47 65.73 78.21 90.89 77.29 88.89 48.29 34.67 68.27 8.62 22.17 14.12 66.16 70.93 71.43 123.51 106.8 113.65 46.14 51.48 38.31 36.23
108.39 111.93 140.4 141.0 138.26 141.34 142.4 151.06 152.08 137.21 140.11 106.35 90.09 138.78 204.39 84.42 64.33 49.43 55.94 62.67 36.43 63.61 98.23 111.1 133.01 147.26 219.84 263.11 63.0 71.33 49.58 52.4
47.16 47.62 43.48 46.04 42.55 42.92 40.69 42.62 43.04 45.72 43.12 43.85 38.69 49.06 46.11 46.3 27.09 19.83 45.13 14.75 21.58 11.21 29.6 32.33 45.3 72.55 65.2 73.17 33.79 35.99 26.61 24.25
44.96 51.84 48.76 50.54 51.82 49.96 50.86 51.43 41.11 45.55 40.19 39.47 33.96 33.08 41.94 31.67 19.69 0.05 33.7 9.96 18.51 23.73 27.08 28.39 55.84 54.93 77.36 71.29 16.44 16.29 21.65 22.22
8.22 8.81 7.58 8.06 9.18 8.81 7.88 10.68 8.53 7.92 8.29 7.54 6.65 8.42 9.0 7.54 4.91 1.58 6.5 4.62 2.41 3.56 5.85 6.5 7.26 10.35 11.27 9.86 5.05 5.4 5.54 5.7
22.01 22.76 18.12 25.72 29.13 29.48 27.66 36.11 37.37 32.08 31.03 27.18 23.2 13.68 28.48 22.3 13.4 0.99 19.37 9.55 10.57 8.47 16.33 19.16 27.25 55.97 46.81 36.88 15.07 15.75 10.97 15.59
25.98 36.93 38.88 45.83 39.09 39.01 41.12 36.23 32.79 26.98 28.78 24.54 35.25 62.12 41.23 40.48 34.66 23.78 31.54 4.72 10.42 1.54 32.88 31.87 70.36 33.34 68.96 85.22 28.02 28.98 15.5 15.03
Smo75640 (AFH14)
 5.94 7.54 9.98 9.4 13.02 10.29 8.59 10.02 10.11 9.44 9.1 8.0 1.84 6.46 10.94 2.49 2.61 1.55 2.17 0.06 0.25 0.0 2.78 2.61 11.14 13.43 13.31 17.93 2.26 2.26 1.9 1.42
28.47 32.49 32.48 41.24 43.83 43.15 42.53 38.66 31.8 31.21 29.78 32.32 42.15 55.63 57.39 33.44 27.49 17.91 23.49 2.26 9.2 9.14 18.79 16.24 49.26 33.64 58.44 57.16 24.7 27.15 14.06 14.99
23.34 25.97 27.11 28.24 23.38 29.76 26.46 29.32 25.7 25.56 24.71 25.98 16.11 32.73 46.62 17.47 14.46 14.95 18.94 8.41 13.42 4.09 15.56 20.2 46.43 39.24 56.22 50.81 14.16 15.74 14.06 15.59
16.18 17.49 20.17 18.78 25.16 21.5 25.5 26.69 28.23 27.54 23.11 20.62 21.58 28.97 46.74 23.29 13.48 12.04 20.86 7.01 5.86 4.44 15.7 16.16 40.23 43.16 49.03 48.49 16.13 15.77 11.64 10.3
Smo88496 (MAP2B)
 69.66 75.13 71.67 78.73 81.72 82.76 82.52 84.81 81.71 84.96 71.08 78.97 59.3 86.78 102.26 62.62 37.21 26.28 59.34 29.25 31.12 34.97 51.25 62.22 140.41 116.87 153.15 143.44 40.54 42.11 37.65 42.26
25.59 22.14 22.96 24.21 23.14 26.27 22.48 22.37 23.62 21.89 21.32 19.28 12.2 16.73 28.24 14.48 15.27 12.2 18.6 7.66 9.79 6.08 12.91 13.59 23.58 20.75 35.98 38.16 15.42 16.27 11.9 12.72
41.61 44.43 39.14 44.57 44.43 40.94 38.1 46.16 47.89 44.04 44.12 41.77 46.39 53.02 43.76 53.48 23.64 18.41 28.37 25.07 12.25 30.16 29.17 29.98 46.47 48.12 46.49 42.05 25.79 27.37 22.09 23.99
Smo98535 (MTN1)
 41.23 48.52 63.54 71.37 80.28 83.74 74.27 71.75 64.25 48.39 52.49 38.99 70.21 119.77 146.83 68.02 65.59 46.88 67.38 67.8 32.99 41.46 81.28 81.63 68.41 60.65 88.16 97.63 53.27 59.81 31.37 30.53

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)