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Heatmap: Cluster_89 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo104905 (RHS19)
 -0.28 0.14 0.43 0.34 0.47 0.51 0.74 0.43 0.49 0.43 0.23 -0.08 -1.3 0.14 -0.6 -1.03 0.37 -0.21 -0.17 -4.79 -2.04 -1.94 0.87 1.1 -2.07 -0.5 -0.04 0.07 -0.16 0.01 -0.09 -0.45
0.04 0.49 0.68 0.33 0.44 0.4 0.7 0.24 0.64 0.31 0.67 0.11 -0.04 -0.6 -0.16 -0.42 0.31 0.01 -1.01 -3.07 -5.2 -5.39 0.84 0.44 -3.46 -0.99 -0.51 0.09 -0.16 0.17 0.09 0.01
Smo106991 (EMB2758)
 -0.04 -0.17 0.1 -0.04 0.49 0.35 0.73 0.63 0.59 0.27 0.34 0.19 0.27 -1.67 -0.59 -0.06 0.16 -0.13 0.52 -3.74 -6.31 - 0.14 -0.08 - -0.19 0.37 0.45 0.76 0.88 -0.55 -0.71
0.07 0.06 0.13 0.02 -0.06 0.01 0.16 -0.23 0.0 0.18 0.1 -0.03 -1.2 -0.23 -0.47 -0.84 0.61 -0.27 -0.47 -1.69 -2.92 -0.89 1.07 0.63 -4.74 -0.77 0.28 0.67 0.81 0.78 0.33 0.31
Smo110362 (SRF8)
 -0.15 -0.15 0.22 0.27 0.14 0.33 0.16 0.4 0.52 0.66 0.54 0.03 0.48 -1.02 -3.33 -0.44 0.8 0.42 0.53 -8.22 -4.94 - 1.42 0.5 -1.84 -1.85 -0.96 -0.55 0.42 0.53 -0.38 -0.2
Smo123205 (KEG)
 -0.09 -0.14 -0.09 -0.05 -0.18 -0.0 0.0 -0.12 -0.12 -0.21 0.37 0.04 0.66 -1.35 -1.9 0.89 0.39 0.52 0.77 -4.75 -0.6 - 0.53 0.43 -0.04 -1.0 -1.03 -1.6 0.68 0.61 0.61 0.44
-0.24 0.07 0.1 0.0 -0.19 -0.48 -0.33 -0.41 -0.5 -0.02 -0.11 0.32 1.28 -1.25 -0.42 0.79 0.78 0.42 0.96 -7.19 - - 0.85 0.71 -6.33 -1.42 -1.32 -1.03 1.0 0.83 -0.02 0.25
0.23 0.17 0.27 0.21 0.14 0.04 0.43 0.41 0.61 0.59 0.61 0.17 -0.0 0.5 -1.61 0.21 -0.23 -0.84 -0.71 -11.1 -9.69 -10.43 0.84 0.92 -6.98 -0.45 0.23 0.6 0.36 0.44 -0.65 -0.85
0.26 0.09 0.27 0.23 0.29 0.69 0.68 0.45 0.81 0.73 0.59 0.41 -0.66 -0.86 -1.0 -0.82 0.38 0.4 -1.02 -4.01 -5.65 -4.08 0.63 0.98 -2.71 -2.95 -1.58 -1.31 0.7 0.97 -0.22 -0.3
Smo177267 (SUC4)
 0.46 0.78 0.73 0.31 0.35 0.61 0.17 -0.07 0.51 0.26 0.52 0.15 -5.41 -8.81 -8.53 -2.61 0.14 -0.1 -0.54 -9.86 -5.4 -8.18 1.35 1.45 -1.32 -2.13 -1.97 -1.77 1.19 0.86 0.44 0.14
0.15 0.15 -0.06 0.19 0.13 0.19 -0.05 0.55 -0.63 0.04 -0.27 -0.03 0.91 -0.89 -1.24 0.56 0.39 1.18 0.7 - - - 0.6 0.56 - -1.24 -1.08 -1.58 0.81 0.83 0.15 0.2
-0.19 -0.05 0.13 0.03 0.11 0.16 0.19 0.33 0.43 0.47 0.48 0.02 0.47 -0.3 -0.52 0.85 -0.21 -0.2 0.08 -4.01 -2.56 -2.63 0.65 0.82 -2.29 -0.93 -0.03 0.14 0.43 0.59 -0.66 -0.34
Smo233841 (RLP29)
 -0.09 0.24 0.51 0.43 0.35 0.6 -0.05 -0.41 0.03 0.22 0.25 0.26 -2.58 -2.9 -0.51 -1.9 0.75 0.72 -0.43 -2.87 -0.74 -1.46 1.54 0.84 -0.7 -1.28 -1.44 -0.93 0.63 0.86 -0.38 -0.24
Smo23881 (ISE1)
 0.2 0.57 0.64 0.59 0.77 0.79 0.42 0.47 0.21 0.21 0.39 0.07 -0.91 -0.54 -0.88 -1.26 0.16 0.7 0.22 -5.79 -1.82 -3.12 -0.21 -0.61 -1.93 -1.68 -0.46 -0.1 0.29 0.61 0.24 0.36
Smo271409 (DHAR2)
 -0.12 -0.01 0.3 0.18 0.09 0.25 0.2 0.11 0.07 -0.22 -0.01 -0.21 0.65 -0.15 -0.48 -0.71 0.51 -0.06 -0.7 -2.72 -1.81 -1.83 1.05 0.55 -0.97 -1.63 0.4 0.43 0.49 0.71 0.02 -0.21
-0.92 -0.58 -0.42 -0.31 0.24 -0.31 -0.25 0.31 -0.15 -0.49 -0.53 -0.69 0.75 -0.58 -0.7 0.93 0.6 1.67 0.47 - - -3.89 0.67 0.61 -3.15 -0.86 -0.93 -1.21 0.76 0.75 0.64 0.64
0.82 0.58 0.59 0.34 0.53 0.46 0.34 0.12 0.71 0.72 0.79 0.41 -0.99 -1.89 -1.58 0.24 -0.3 0.11 -0.69 - -3.2 - 0.87 0.75 -2.48 -0.23 -1.22 -1.27 0.61 0.4 -0.64 -0.58
0.01 0.4 0.16 0.11 0.56 0.83 0.42 0.37 0.18 -0.16 -0.17 -0.27 -0.73 -1.21 -0.24 -0.95 0.63 0.83 0.14 -2.8 -0.75 -1.61 -0.1 -0.33 -0.09 -1.98 0.09 0.15 0.3 0.4 0.13 0.28
0.44 0.45 0.68 0.45 0.56 0.15 0.45 0.32 0.53 0.58 0.71 0.36 -0.78 -0.76 -0.77 -0.49 -0.08 -0.14 -1.27 -4.25 - -5.39 0.95 0.83 -3.95 -0.32 -0.63 -0.09 -0.11 0.19 0.22 0.06
0.25 0.27 0.66 0.33 0.3 0.36 0.48 0.27 0.41 0.49 0.54 0.26 -0.33 -1.29 -0.88 -0.04 0.19 0.19 -0.57 -2.65 -1.35 -1.97 0.92 0.98 -1.37 -0.75 -1.27 -1.1 0.4 0.31 -0.44 -0.41
-0.57 -0.24 0.11 0.13 0.07 0.5 0.74 0.8 0.31 0.27 0.03 -0.19 0.1 -1.11 -0.62 0.14 0.21 0.31 0.24 -2.11 -3.06 -4.19 0.29 0.27 -1.2 -0.12 0.59 0.41 0.41 0.44 -0.49 -0.38
0.02 -0.35 0.56 0.12 0.19 0.09 0.18 0.54 0.11 0.09 -0.17 0.05 0.29 -0.88 -0.97 0.4 0.56 0.43 0.28 -4.03 -2.86 -3.07 0.62 0.73 -2.04 -0.97 -0.81 -0.28 0.66 0.93 0.02 -0.01
-1.07 -0.67 -0.16 -0.74 1.16 -0.1 -0.77 -0.15 -2.44 -1.86 -0.24 -1.06 0.8 -1.05 -0.43 0.92 0.84 1.7 1.01 - - - 0.74 0.56 - -2.7 -1.39 -2.09 0.89 0.76 0.81 0.85
-0.65 -0.18 0.64 -0.01 -0.61 -0.02 0.76 -0.1 0.17 -0.09 0.32 0.17 -5.15 -5.9 -7.07 -3.84 0.76 1.13 -4.39 - -4.64 -0.42 1.7 1.78 -3.99 -0.17 -2.07 -1.06 1.05 1.04 0.15 -0.34
Smo410538 (CARB)
 0.21 0.28 0.07 0.16 0.15 0.11 -0.01 -0.16 -0.22 -0.11 0.23 -0.05 0.6 -0.57 -0.52 0.7 0.27 -0.05 1.19 -5.21 -1.15 -1.21 0.38 0.4 -0.64 -0.65 -0.59 -0.71 0.22 0.21 0.08 0.05
0.61 0.38 0.7 0.55 0.1 0.2 0.43 0.59 0.46 0.55 0.9 0.53 -0.18 -1.39 -1.25 0.05 -0.27 -0.89 0.03 - - -5.01 0.7 0.78 -2.9 -1.71 -1.3 -0.92 0.12 0.32 0.43 0.4
0.35 0.37 0.72 0.38 0.26 0.16 0.8 0.27 0.46 0.35 0.53 0.32 -2.43 -6.22 -3.6 -3.02 0.85 0.68 -2.31 -0.42 -3.53 -1.19 1.58 1.54 - -1.78 -2.3 -1.44 -0.04 0.29 -0.07 -0.54
-0.72 -1.01 -0.13 -0.53 -1.08 -0.46 -0.55 -0.3 -0.25 0.02 -0.2 -0.11 0.95 -1.31 -0.58 0.67 0.38 1.27 0.77 -0.63 -0.82 -0.45 0.43 0.34 -1.04 -0.02 -0.74 -0.17 0.45 0.58 0.37 0.32
-0.12 0.27 0.49 0.25 0.13 0.28 0.6 0.32 0.63 0.39 0.38 0.08 -1.28 -0.26 -1.27 -0.33 -0.0 0.0 -0.05 -1.86 -1.42 -2.44 1.19 0.9 -2.62 -1.71 -0.06 0.3 0.04 0.27 -0.43 -0.06
0.2 -0.08 -0.01 0.12 0.21 0.28 0.47 0.69 0.61 0.48 0.41 0.32 -0.83 0.34 -0.07 -0.71 -0.1 -0.4 -1.03 -3.42 -3.38 -6.58 0.85 0.75 -1.77 -0.72 0.5 0.54 0.14 0.22 -0.36 -0.18
0.01 0.12 0.34 0.11 -0.3 -0.16 -0.42 -0.46 0.06 0.29 0.01 -0.48 1.18 -2.82 -2.65 1.26 0.5 0.75 1.18 - -5.71 - 0.58 0.77 -2.31 -2.16 -2.4 -1.81 0.56 0.64 0.59 0.49
Smo438165 (YLMG1-2)
 0.25 0.37 0.18 0.09 0.53 0.51 0.3 0.2 -0.01 -0.28 -0.13 -0.33 -1.09 -0.18 -0.63 -0.33 0.48 0.59 0.31 -1.92 -1.0 -0.86 -0.11 -0.08 -0.3 -1.19 0.1 0.02 0.35 0.35 0.28 0.39
Smo439136 (APAO)
 -0.31 0.05 0.25 0.34 0.09 0.14 0.65 0.01 0.64 0.15 0.29 -0.15 -5.3 -5.91 -5.47 -4.95 0.54 0.88 -2.76 -1.67 -2.93 -1.93 0.86 1.3 -0.97 -3.22 0.0 -0.27 0.45 0.76 0.67 1.34
Smo439204 (PIR1)
 0.1 0.09 0.34 0.22 0.25 0.08 0.2 0.37 0.66 0.75 0.84 0.61 -0.19 -0.75 -0.68 -0.42 -0.12 -0.62 -0.69 -7.14 -5.03 -6.65 1.17 1.24 -2.66 0.16 -0.8 -0.32 0.41 0.47 -0.84 -0.86
0.26 0.11 0.08 -0.06 0.09 -0.07 0.05 0.35 0.6 0.8 0.74 0.53 -0.47 -0.59 -1.82 -0.0 -0.1 0.19 -0.32 -4.04 -1.7 -3.86 0.95 0.97 -1.77 -0.1 -0.69 -0.5 0.3 0.3 0.03 0.17
-0.23 0.24 0.35 0.29 0.67 0.73 0.67 0.63 0.37 0.25 -0.02 0.18 -0.9 -1.57 -1.49 0.35 0.25 0.36 0.67 -2.07 -2.93 - 0.23 -0.33 -1.23 -0.91 -0.4 0.37 0.43 0.3 -0.17 0.15
-0.6 -0.3 0.01 -0.05 0.02 0.26 0.39 0.17 0.4 0.33 0.17 -0.22 0.68 0.5 -0.67 0.52 0.3 0.73 -0.98 -4.34 -2.52 -5.69 0.95 0.92 -3.04 -1.29 -0.26 0.38 0.4 0.48 -0.62 -0.39
-0.64 -1.29 0.12 -0.32 0.06 -0.42 -0.36 -1.1 -1.19 0.07 -1.54 -0.51 0.7 -0.75 -0.33 1.39 0.29 0.89 1.78 - - - 0.99 0.77 - -2.33 -1.27 -1.6 1.1 0.93 0.62 0.16
Smo69727 (TRFL6)
 -0.15 -0.46 0.01 -0.17 -0.71 -0.1 -0.37 -0.39 0.23 -0.22 -0.06 0.06 0.92 -0.98 -1.14 0.84 0.24 0.78 1.09 -1.06 -1.11 -2.38 0.71 0.73 -0.49 -1.46 -2.18 -1.32 0.67 0.74 0.19 0.24
-0.6 -0.15 0.13 0.12 0.24 0.3 0.7 0.74 0.69 0.59 0.18 0.25 -0.08 -1.37 -0.25 0.52 0.56 -0.13 0.66 -5.75 -4.85 -7.6 0.4 0.39 -2.03 -0.73 -0.66 -0.55 0.76 0.78 -0.64 -0.68
-0.06 0.15 0.13 -0.08 -0.07 -0.07 -0.29 -0.45 -0.37 -0.07 -0.37 -0.02 0.31 -0.78 -0.03 0.93 0.55 0.52 1.26 -7.16 -1.95 -3.67 0.63 0.79 -1.49 -2.25 -2.68 -2.29 0.85 0.87 0.47 0.49
-0.23 -0.03 0.04 -0.03 0.25 0.57 0.28 0.02 0.11 0.1 -0.0 -0.44 -0.05 1.01 -1.58 -0.01 0.07 1.01 -1.07 -3.54 -2.22 -2.21 1.32 0.77 -0.49 -1.82 -0.02 0.19 -0.16 0.05 -0.33 -0.02
0.26 0.12 0.56 0.35 0.38 0.72 0.16 -0.69 0.14 0.14 0.34 -0.18 -1.86 -1.58 -0.23 -1.48 0.71 0.54 1.18 -0.35 -0.64 -3.94 1.26 -0.16 -2.63 -1.22 -1.06 -1.26 0.42 0.57 -0.05 -0.5
0.04 -0.15 -0.04 0.3 0.13 0.03 0.3 0.41 -0.06 0.24 -0.1 -0.04 0.87 -0.43 -0.5 1.03 0.56 0.43 0.74 -5.84 - - 0.13 0.24 -0.54 -1.44 -0.73 -1.07 0.29 0.23 0.22 0.44
-0.44 -0.2 0.16 0.04 0.4 0.27 0.61 0.36 0.59 0.36 0.17 -0.29 -0.66 -0.56 -0.23 -0.96 0.67 0.3 -0.51 - -9.06 -6.04 1.34 1.45 -4.56 -0.47 -0.9 -0.9 0.33 0.68 -0.1 0.1
-0.62 -0.04 0.43 -0.45 0.18 -0.59 -0.77 -0.55 -0.63 -0.75 -0.31 -0.46 0.02 -0.99 -1.48 0.42 0.91 1.96 1.19 -6.65 - - 0.98 0.71 - -1.27 -0.75 -0.03 0.64 0.84 0.19 0.12
Smo86219 (MRH1)
 0.34 0.24 0.3 0.21 0.17 0.19 0.22 0.18 0.27 0.34 0.37 0.25 -1.6 -0.57 -1.13 -1.22 0.32 -0.27 -0.93 0.04 -0.28 -1.43 0.65 0.31 -0.42 -0.84 0.05 0.35 0.43 0.49 -0.16 -0.23
-3.11 - -0.98 -2.1 0.63 -1.53 -1.73 -1.88 -1.67 -0.3 - - -0.61 - -0.71 2.02 0.21 2.2 1.28 - - - 1.51 1.94 - - - - 0.76 0.97 1.11 0.66
-0.18 -0.62 -0.41 0.05 0.22 0.25 0.07 0.43 0.96 0.85 0.69 0.02 -1.92 -1.12 -0.79 -1.09 -0.07 -0.21 -0.84 -4.0 -1.85 0.08 0.99 0.56 -1.2 -1.72 0.2 0.12 0.6 0.8 0.02 0.41
-0.41 -0.77 -0.57 -0.41 -1.0 -0.53 -1.05 -0.73 -0.31 -0.32 -0.52 0.15 0.8 0.87 -0.87 1.28 0.1 1.37 1.63 -2.34 -2.7 -3.03 0.77 0.81 -2.94 -1.75 -1.98 -2.35 0.75 0.8 0.18 -0.2
-0.07 0.39 -0.08 -0.3 -0.64 -0.05 0.04 -0.69 -0.25 -0.14 -0.31 -0.08 0.59 -0.99 -0.89 0.82 0.46 0.9 0.8 -3.74 -1.52 -5.85 0.67 0.61 -0.31 -1.14 -1.57 -1.17 0.7 0.72 0.63 0.6
0.09 0.26 0.75 0.43 0.34 0.31 0.79 0.19 0.48 0.36 0.23 -0.07 -0.31 -0.13 -1.78 -0.33 0.16 -0.02 0.25 - - -8.04 0.59 0.65 -7.54 -0.49 0.23 0.81 0.31 0.5 -0.79 -1.16
Smo91359 (FMA)
 -0.07 -0.15 0.18 -0.13 0.15 0.11 0.43 0.57 0.52 0.45 0.4 0.2 -7.83 - - -4.17 0.19 0.31 -0.07 - -0.99 - 1.28 1.75 -0.8 0.2 -1.13 -1.53 0.49 0.15 0.66 0.59
Smo96692 (HSL1)
 0.33 0.45 0.72 0.34 0.44 0.39 0.33 0.31 0.59 0.64 0.71 0.44 -2.31 -2.31 -2.78 -1.32 0.49 0.26 -1.25 -3.02 -1.62 -1.17 1.45 0.43 -2.33 -1.23 -0.33 0.1 0.46 0.49 -0.89 -1.07
Smo97235 (RPS14)
 -0.25 -0.22 0.3 -0.4 0.21 0.24 -0.89 -0.47 -0.7 -0.62 -0.42 -0.79 0.91 0.36 0.47 1.1 0.41 1.35 0.98 -5.65 - - 0.54 0.59 - -2.46 -0.97 -1.02 0.55 0.7 0.12 0.31
-0.11 -0.56 -0.38 -0.09 -0.87 -0.14 -0.25 -0.03 -0.85 -0.03 -0.69 -0.31 0.68 -0.51 0.52 0.9 -0.02 1.35 1.09 - -5.28 -0.63 0.37 0.61 -3.56 -0.87 -0.42 -0.39 0.63 0.27 0.6 0.36
Smo98949 (VAC-INV)
 -0.43 0.54 0.86 0.71 0.28 0.29 0.9 0.33 0.38 0.3 0.05 -0.14 -2.13 -1.64 -2.14 -0.7 0.61 0.44 -0.09 -5.38 -2.36 -5.18 1.21 1.05 -0.4 -2.54 -0.85 -0.47 0.49 0.58 -0.45 -0.65
-0.11 0.18 0.02 -0.19 -0.17 -0.24 -0.35 -0.12 -0.01 0.17 0.18 0.13 0.21 -0.91 -1.63 0.23 0.26 1.26 0.32 -1.69 -4.39 -0.92 0.79 0.62 -1.94 -0.24 -0.74 -0.45 0.44 0.44 0.5 0.61

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.