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Heatmap: Cluster_89 (HCCA)

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Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo104905 (RHS19)
 57.32 76.97 93.6 88.01 96.56 99.24 116.42 93.87 98.12 93.74 81.92 65.9 28.31 76.79 46.04 34.14 89.76 60.23 61.95 2.51 16.99 18.18 127.68 149.34 16.58 49.34 67.86 73.1 62.29 69.95 65.35 50.83
8.92 12.22 13.91 10.91 11.82 11.5 14.1 10.31 13.52 10.76 13.82 9.36 8.47 5.73 7.81 6.48 10.76 8.78 4.31 1.03 0.24 0.21 15.53 11.8 0.79 4.39 6.09 9.29 7.79 9.81 9.27 8.76
Smo106991 (EMB2758)
 8.41 7.71 9.27 8.43 12.17 11.03 14.34 13.36 13.04 10.41 10.94 9.86 10.44 2.72 5.74 8.3 9.64 7.93 12.38 0.65 0.11 0.0 9.55 8.19 0.0 7.57 11.21 11.83 14.65 15.96 5.92 5.3
85.92 85.25 89.54 83.07 78.33 82.62 91.36 69.89 82.12 92.81 87.94 80.45 35.62 69.99 58.96 45.84 125.11 68.08 59.22 25.42 10.84 44.06 171.41 126.34 3.07 47.87 99.64 130.5 143.86 141.05 103.06 101.67
Smo110362 (SRF8)
 10.66 10.68 13.83 14.32 13.05 14.87 13.25 15.69 17.02 18.8 17.28 12.08 16.5 5.87 1.18 8.76 20.65 15.87 17.06 0.04 0.39 0.0 31.62 16.78 3.31 3.29 6.09 8.09 15.82 17.14 9.11 10.32
Smo123205 (KEG)
 105.9 102.6 106.12 109.15 99.57 112.79 113.12 103.97 103.84 97.69 145.8 115.92 178.64 44.19 30.15 208.43 147.8 161.98 192.01 4.19 74.52 0.0 163.09 151.78 110.05 56.38 55.26 37.29 180.22 172.75 172.64 152.83
80.13 99.66 101.45 94.68 83.18 67.73 75.47 71.03 67.09 93.43 87.52 118.15 230.41 39.73 70.87 163.43 162.5 126.66 184.41 0.65 0.0 0.0 170.29 154.52 1.17 35.35 37.85 46.3 189.76 167.81 93.46 112.84
122.24 117.43 126.35 120.48 115.41 107.28 141.2 138.56 159.1 156.71 159.1 117.83 104.35 147.34 34.31 120.44 89.05 58.4 64.07 0.05 0.13 0.08 187.19 198.31 0.82 76.42 122.38 157.79 133.69 141.42 66.79 57.81
100.31 89.44 101.2 98.61 102.28 135.36 134.69 114.87 146.64 139.43 126.14 111.84 53.23 46.14 41.89 47.42 109.16 111.08 41.47 5.22 1.68 4.97 130.14 165.66 12.84 10.84 28.05 33.81 136.22 164.64 71.8 68.31
Smo177267 (SUC4)
 75.68 94.87 91.64 68.21 70.44 84.22 62.23 52.39 78.63 66.22 79.15 61.37 1.29 0.12 0.15 9.05 60.91 51.25 37.88 0.06 1.3 0.19 140.04 150.43 22.11 12.6 14.03 16.15 125.97 99.78 74.88 60.55
16.23 16.32 14.09 16.78 16.06 16.74 14.12 21.49 9.45 15.11 12.15 14.36 27.51 7.91 6.19 21.59 19.22 33.18 23.77 0.0 0.0 0.0 22.29 21.62 0.0 6.23 6.93 4.89 25.69 26.03 16.29 16.88
85.4 93.61 106.48 99.25 105.19 108.51 110.81 121.75 131.0 134.56 135.67 98.28 134.71 79.12 67.95 174.57 84.08 84.6 102.42 6.03 16.47 15.74 152.84 171.18 19.88 50.93 95.0 107.21 130.97 145.76 61.49 76.8
Smo233841 (RLP29)
 23.06 28.86 34.78 33.09 31.15 37.24 23.69 18.46 24.95 28.44 29.12 29.31 4.09 3.28 17.19 6.55 41.28 40.28 18.13 3.34 14.7 8.92 71.15 43.92 15.04 10.11 9.03 12.83 37.88 44.34 18.88 20.78
Smo23881 (ISE1)
 6.17 7.99 8.4 8.1 9.2 9.28 7.21 7.44 6.22 6.22 7.04 5.66 2.87 3.7 2.92 2.25 6.02 8.75 6.28 0.1 1.53 0.62 4.66 3.53 1.42 1.68 3.91 5.03 6.57 8.19 6.36 6.91
Smo271409 (DHAR2)
 145.1 156.08 193.7 178.6 167.65 187.31 181.13 169.86 165.7 135.2 156.05 135.73 247.03 141.89 112.75 95.97 224.09 151.27 97.02 23.8 44.96 44.14 325.28 230.86 80.07 50.69 207.1 211.72 221.24 257.71 159.38 136.2
23.29 29.56 33.1 35.55 52.24 35.57 37.26 54.66 39.74 31.45 30.62 27.48 74.16 29.58 27.16 84.14 66.97 141.0 61.42 0.0 0.0 2.99 70.32 67.6 4.97 24.33 23.17 19.11 74.89 74.23 68.9 68.68
176.62 149.33 150.01 126.64 144.49 137.25 126.73 108.92 163.82 164.7 172.3 132.83 50.39 26.89 33.33 118.45 81.2 108.22 62.02 0.0 10.87 0.0 182.34 168.01 17.88 85.21 43.01 41.41 152.44 132.24 64.32 66.9
21.03 27.46 23.23 22.44 30.72 37.07 27.87 26.94 23.58 18.6 18.49 17.28 12.55 9.02 17.62 10.74 32.16 36.95 23.0 3.0 12.4 6.8 19.36 16.58 19.52 5.28 22.18 23.08 25.71 27.55 22.82 25.29
22.38 22.55 26.43 22.62 24.46 18.36 22.64 20.7 23.87 24.78 27.03 21.28 9.66 9.74 9.68 11.8 15.69 14.98 6.86 0.87 0.0 0.39 32.07 29.47 1.07 13.25 10.69 15.58 15.3 18.85 19.21 17.29
409.41 415.51 544.98 432.95 423.98 442.62 480.51 414.65 457.02 482.32 499.15 412.1 274.05 141.14 187.72 335.03 394.02 392.85 231.98 54.8 135.44 88.08 652.68 678.83 133.67 205.37 142.54 160.79 453.99 427.73 253.82 258.51
40.32 50.61 64.47 65.48 62.58 84.55 99.42 104.23 74.21 72.04 61.13 52.35 64.1 27.61 38.81 66.01 69.05 74.21 70.6 13.78 7.13 3.28 73.13 72.11 25.9 55.1 89.84 79.35 79.44 81.12 42.4 46.01
5.84 4.51 8.48 6.23 6.54 6.12 6.5 8.33 6.21 6.11 5.11 5.97 7.02 3.12 2.94 7.6 8.48 7.74 6.96 0.35 0.79 0.68 8.86 9.51 1.4 2.92 3.28 4.75 9.09 10.92 5.82 5.71
0.76 1.01 1.43 0.95 3.59 1.49 0.94 1.44 0.3 0.44 1.35 0.77 2.78 0.77 1.19 3.03 2.87 5.2 3.23 0.0 0.0 0.0 2.68 2.36 0.0 0.25 0.61 0.38 2.97 2.71 2.81 2.88
14.04 19.46 34.36 21.93 14.51 21.77 37.28 20.54 24.79 20.79 27.61 24.84 0.62 0.37 0.16 1.55 37.33 48.28 1.05 0.0 0.89 16.44 71.77 75.9 1.39 19.6 5.26 10.6 45.8 45.41 24.5 17.42
Smo410538 (CARB)
 15.39 16.23 14.0 14.93 14.78 14.44 13.29 11.99 11.48 12.37 15.66 12.92 20.22 8.99 9.32 21.72 16.1 12.88 30.36 0.36 6.03 5.77 17.43 17.56 8.55 8.53 8.85 8.14 15.52 15.45 14.15 13.86
18.42 15.74 19.67 17.68 12.97 13.84 16.27 18.2 16.66 17.65 22.5 17.38 10.64 4.61 5.08 12.47 10.05 6.54 12.35 0.0 0.0 0.37 19.61 20.8 1.61 3.7 4.91 6.36 13.13 15.1 16.24 15.94
9.4 9.52 12.14 9.63 8.82 8.27 12.82 8.87 10.16 9.37 10.68 9.23 1.37 0.1 0.61 0.91 13.29 11.79 1.49 5.53 0.64 3.22 22.07 21.44 0.0 2.15 1.5 2.71 7.16 9.05 7.04 5.08
1.35 1.1 2.03 1.54 1.05 1.61 1.52 1.8 1.87 2.25 1.93 2.06 4.27 0.9 1.49 3.52 2.89 5.35 3.8 1.43 1.26 1.63 2.99 2.81 1.08 2.19 1.33 1.97 3.04 3.32 2.87 2.76
18.68 24.5 28.52 24.15 22.2 24.59 30.84 25.33 31.36 26.69 26.51 21.52 8.36 16.92 8.45 16.2 20.26 20.36 19.56 5.61 7.59 3.75 46.44 37.83 3.3 6.21 19.46 24.94 20.89 24.42 15.13 19.49
53.53 44.09 46.17 50.45 53.75 56.41 64.34 75.18 70.7 65.02 61.56 58.04 26.15 58.91 44.28 28.37 43.41 35.19 22.74 4.33 4.48 0.48 83.95 78.36 13.59 28.21 65.52 67.39 51.37 54.03 36.21 40.99
9.51 10.29 11.99 10.25 7.7 8.47 7.09 6.89 9.85 11.55 9.54 6.78 21.39 1.34 1.51 22.76 13.42 15.94 21.49 0.0 0.18 0.0 14.2 16.13 1.91 2.11 1.8 2.7 13.99 14.72 14.26 13.27
Smo438165 (YLMG1-2)
 65.75 71.37 62.5 58.83 79.77 78.34 67.93 63.53 54.7 45.54 50.43 43.99 25.9 48.86 35.7 43.79 77.16 83.32 68.56 14.61 27.52 30.39 50.96 52.23 44.96 24.2 59.19 55.87 70.31 70.56 67.0 72.09
Smo439136 (APAO)
 272.48 348.51 401.15 426.04 358.9 371.45 531.06 340.18 525.74 375.69 413.27 305.05 8.55 5.62 7.6 10.94 492.24 622.78 49.98 105.92 44.35 88.54 612.58 830.41 172.91 36.26 338.39 280.62 462.07 571.08 537.43 855.8
Smo439204 (PIR1)
 261.1 258.63 309.25 284.17 289.91 258.39 280.27 315.33 385.09 409.61 436.79 373.28 213.82 145.31 152.03 182.45 223.61 158.22 151.38 1.73 7.49 2.42 548.08 575.52 38.55 271.58 140.24 195.1 323.93 338.61 135.74 134.39
91.3 82.25 80.18 73.2 80.7 72.26 79.0 97.08 114.95 132.76 126.68 109.51 54.89 50.55 21.5 75.9 70.92 86.55 60.97 4.62 23.37 5.23 146.7 148.86 22.29 71.15 47.09 53.89 93.62 93.38 77.5 85.7
5.57 7.74 8.32 8.03 10.39 10.89 10.45 10.11 8.48 7.77 6.46 7.4 3.51 2.2 2.33 8.35 7.81 8.38 10.44 1.57 0.86 0.0 7.7 5.22 2.79 3.49 4.97 8.47 8.81 8.05 5.83 7.24
47.07 58.14 72.16 68.78 72.22 85.35 93.87 80.25 94.23 90.08 80.48 61.27 114.77 100.7 44.93 102.34 88.19 118.47 36.13 3.52 12.41 1.38 138.42 134.89 8.68 29.23 59.73 92.95 94.26 99.88 46.62 54.34
29.12 18.55 49.09 36.39 47.33 33.76 35.17 21.09 19.9 47.58 15.53 31.88 73.46 26.85 36.1 118.42 55.4 84.02 155.51 0.0 0.0 0.0 89.82 77.28 0.0 9.02 18.71 14.96 96.83 86.5 69.82 50.75
Smo69727 (TRFL6)
 155.09 124.46 172.42 152.69 104.67 159.65 132.74 131.36 201.67 147.57 164.07 178.37 324.85 86.91 77.65 308.01 202.1 293.83 364.47 82.09 79.36 32.9 280.1 285.35 121.97 62.52 37.74 68.68 273.33 287.61 195.17 202.2
17.84 24.37 29.71 29.46 31.99 33.25 43.82 45.25 43.75 40.83 30.74 32.25 25.54 10.5 22.8 38.91 39.9 24.7 42.76 0.5 0.94 0.14 35.72 35.49 6.61 16.28 17.07 18.53 45.72 46.42 17.36 16.91
34.63 40.04 39.46 34.18 34.56 34.42 29.57 26.53 28.0 34.34 28.0 35.7 44.95 21.11 35.52 68.73 52.96 51.71 86.56 0.25 9.37 2.85 55.84 62.41 12.89 7.59 5.64 7.4 65.05 66.25 49.98 50.72
77.35 88.96 93.33 89.26 108.36 134.77 110.23 92.02 97.85 97.16 90.75 67.06 87.76 183.09 30.49 90.02 95.24 183.35 43.31 7.84 19.51 19.63 226.65 154.76 64.95 25.76 89.8 103.75 81.4 94.05 72.33 89.77
12.06 10.88 14.81 12.82 13.07 16.53 11.18 6.23 11.04 11.03 12.71 8.84 2.76 3.37 8.57 3.59 16.39 14.63 22.82 7.88 6.46 0.65 23.97 8.97 1.62 4.31 4.8 4.18 13.43 14.95 9.7 7.11
9.43 8.22 8.87 11.29 10.0 9.33 11.22 12.17 8.75 10.83 8.51 8.9 16.67 6.79 6.47 18.61 13.5 12.29 15.24 0.16 0.0 0.0 9.99 10.77 6.3 3.37 5.51 4.36 11.18 10.7 10.68 12.45
17.38 20.53 26.35 24.22 31.21 28.53 36.01 30.35 35.61 30.44 26.62 19.31 14.99 16.01 20.16 12.19 37.6 29.18 16.65 0.0 0.04 0.36 59.87 64.42 1.0 17.05 12.7 12.67 29.74 37.75 22.0 25.4
19.84 29.7 41.22 22.36 34.74 20.31 17.97 20.87 19.79 18.13 24.63 22.21 31.01 15.38 10.95 40.8 57.33 118.9 69.74 0.3 0.0 0.0 60.34 50.04 0.0 12.64 18.11 29.93 47.78 54.81 34.95 33.11
Smo86219 (MRH1)
 153.79 143.54 150.07 140.48 136.54 138.84 142.01 137.88 147.02 153.98 157.46 144.59 40.24 82.06 55.57 52.16 152.25 100.52 63.74 124.89 99.89 45.22 190.68 150.7 91.15 68.01 126.01 155.41 163.62 170.91 108.81 103.61
0.18 0.0 0.79 0.37 2.42 0.54 0.47 0.43 0.49 1.27 0.0 0.0 1.03 0.0 0.96 6.35 1.81 7.23 3.8 0.0 0.0 0.0 4.46 6.04 0.0 0.0 0.0 0.0 2.66 3.07 3.38 2.48
10.48 7.75 8.98 12.34 13.85 14.12 12.52 15.99 23.14 21.4 19.2 12.03 3.15 5.48 6.86 5.58 11.33 10.33 6.67 0.74 3.3 12.55 23.69 17.53 5.17 3.61 13.68 12.91 18.01 20.72 12.07 15.79
33.06 25.72 29.63 33.03 21.9 30.34 21.24 26.44 35.28 35.21 30.51 48.8 76.24 80.15 24.03 106.65 47.08 113.18 135.76 8.67 6.76 5.38 74.71 76.71 5.72 13.03 11.12 8.61 73.76 76.17 49.78 38.14
120.86 166.15 119.79 103.31 81.39 122.31 130.21 78.6 106.93 115.13 102.65 119.83 190.95 63.87 68.36 224.34 174.06 236.04 221.32 9.5 44.15 2.2 202.31 193.31 102.29 57.7 42.81 56.23 206.12 208.94 196.36 192.09
28.77 32.3 45.3 36.41 34.09 33.42 46.73 30.84 37.47 34.55 31.7 25.59 21.72 24.69 7.85 21.4 30.1 26.57 32.1 0.0 0.0 0.1 40.65 42.37 0.15 19.25 31.71 47.33 33.4 38.2 15.61 12.1
Smo91359 (FMA)
 11.72 11.05 13.92 11.21 13.66 13.23 16.52 18.2 17.64 16.81 16.26 14.1 0.05 0.0 0.0 0.68 14.0 15.3 11.74 0.0 6.19 0.0 29.91 41.5 7.06 14.13 5.62 4.25 17.25 13.6 19.38 18.49
Smo96692 (HSL1)
 31.53 34.15 41.23 31.63 33.9 32.86 31.56 31.04 37.68 38.96 40.86 34.03 5.06 5.06 3.64 10.03 35.09 30.0 10.5 3.08 8.13 11.14 68.61 33.7 4.96 10.66 19.91 26.88 34.32 35.23 13.48 11.95
Smo97235 (RPS14)
 15.32 15.61 22.42 13.79 21.04 21.47 9.84 13.1 11.22 11.83 13.63 10.51 34.04 23.28 25.17 38.88 24.21 46.28 35.84 0.36 0.0 0.0 26.38 27.39 0.0 3.3 9.3 8.97 26.65 29.5 19.76 22.5
14.55 10.63 12.05 14.71 8.58 14.24 13.16 15.32 8.72 15.39 9.74 12.65 25.24 11.01 22.54 29.3 15.52 40.02 33.36 0.0 0.4 10.16 20.27 24.02 1.33 8.6 11.7 12.01 24.36 18.87 23.77 20.16
Smo98949 (VAC-INV)
 57.17 112.01 139.54 125.35 93.6 94.08 143.42 96.26 100.21 94.39 79.75 69.5 17.59 24.61 17.47 47.15 117.55 104.13 72.13 1.84 15.01 2.12 177.33 159.34 58.16 13.22 42.56 55.37 107.83 114.98 56.15 49.05
28.58 34.97 31.38 26.97 27.43 26.21 24.19 28.33 30.68 34.6 34.86 33.83 35.57 16.39 9.95 36.15 36.82 73.96 38.61 9.55 1.47 16.29 53.22 47.52 8.02 26.1 18.52 22.51 41.99 41.88 43.51 47.14

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)