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Heatmap: Cluster_71 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
2.33 - - - -0.7 0.32 0.14 - -0.14 -1.01 1.21 - - - - -0.76 - -0.34 -0.91 - - - -0.77 0.68 2.3 - 1.57 2.48 -0.92 -0.88 0.7 -
3.33 0.96 -0.22 0.13 - 0.08 - - 0.79 0.93 - 0.11 - 1.56 0.46 - - - - - - - - - - 1.33 - 2.43 - - - -
1.2 -3.36 - - - -1.56 - -2.51 -3.3 -1.47 -3.38 -2.31 -0.09 0.27 0.62 -0.61 -0.8 -0.17 -0.51 2.24 0.1 -0.66 -0.11 -0.37 1.98 1.46 1.35 0.02 0.96 -0.28 -1.01 -2.66
1.84 0.63 -1.09 -0.08 -1.32 0.69 0.05 -1.52 0.37 0.06 0.98 0.36 -0.22 -0.03 0.18 0.1 0.97 -1.08 1.56 -5.27 - - -2.09 -0.7 - 0.26 -1.27 0.23 -0.42 -0.02 -0.46 -0.1
Smo136259 (TUB2)
 1.78 -3.73 -1.36 -2.57 -1.07 -0.22 1.13 -1.19 -0.36 0.85 -1.22 -0.19 2.59 -0.66 0.47 2.0 -1.9 - 0.91 - - - -1.49 -0.01 - -0.45 -0.56 -1.26 -0.57 0.79 - -1.65
0.64 -0.02 -0.35 -1.1 -0.9 -0.78 0.58 0.18 0.9 0.9 0.79 0.64 -2.18 -0.56 -3.2 -2.47 -0.63 -1.4 -0.84 -5.89 2.39 -5.57 -0.9 -0.94 -0.13 0.44 0.38 -0.12 -0.4 -0.77 0.32 0.3
Smo172677 (ATB2)
 0.46 0.34 -0.35 -0.25 0.03 0.03 0.07 0.65 -0.15 0.02 -0.17 0.37 -1.63 1.67 -0.63 -0.16 -0.35 -1.59 -0.43 -4.17 0.68 -5.69 -0.66 -0.99 0.52 -0.03 1.28 0.67 -0.08 -0.45 -0.48 -1.16
1.67 0.81 0.62 -0.38 -0.75 0.31 -0.02 1.6 0.96 0.18 1.21 0.19 - - -3.21 -3.19 -1.71 - -0.14 - 0.99 1.42 -1.62 -2.26 - -0.91 0.71 1.14 -2.31 -2.26 -0.77 -1.43
Smo180766 (ATB2)
 0.28 0.26 0.22 0.14 -0.06 0.38 0.16 0.6 0.05 0.04 0.08 0.21 -3.45 0.91 -1.76 -1.3 -0.32 -0.63 -0.06 -4.85 0.63 -3.21 -0.63 -0.7 1.38 0.4 1.08 0.61 -0.17 -0.57 -0.87 -1.17
Smo36987 (NTT)
 0.67 0.09 0.41 0.01 0.08 0.17 -0.34 -0.04 0.28 0.41 0.33 0.49 0.04 -0.03 0.12 0.97 -0.21 -0.26 0.96 - -2.17 -7.43 -1.25 -1.47 -0.05 0.56 -0.16 0.35 -0.17 -0.1 -0.22 -0.23
1.34 -0.28 -1.07 -3.04 0.68 -1.37 -1.17 1.52 1.9 0.57 1.72 0.53 -2.26 -1.02 -0.77 -2.28 -1.34 - -2.3 - 2.51 - -1.24 -1.38 0.63 -0.35 0.02 - -0.97 -2.39 -2.55 -
-0.44 - 0.23 - - - - - 2.72 - 1.33 -2.6 - - - - - - - - - - 0.77 0.03 4.18 - - - - - - -
0.41 0.07 0.26 -0.08 0.18 0.29 0.08 0.06 0.33 0.36 0.23 0.17 -0.04 0.46 0.23 0.41 -0.82 -2.35 0.63 -1.38 0.19 -0.59 -0.63 -0.54 0.17 0.31 -0.36 -0.35 -0.2 -0.15 -0.06 -0.2
1.76 1.46 -0.88 -1.38 1.51 1.11 0.2 - - 0.27 0.26 0.21 -0.49 - - - - -0.51 0.13 - - - - -2.27 - 1.33 2.13 2.49 - - - -
3.11 - - - - - - 1.88 - 1.05 - - 0.72 1.51 2.03 - - - 0.59 - - - - - - - - - 2.19 - 0.61 0.55
2.95 0.86 -0.34 0.98 - - 1.92 1.66 - - 0.88 - - - 0.32 - - - - - - - - - - - - 3.27 - - - -
0.15 -0.3 -0.31 0.26 0.25 0.37 0.14 0.38 0.36 0.51 0.43 0.15 -0.84 -0.24 0.17 -0.62 -0.71 0.04 -0.07 -0.7 -0.55 0.23 -0.31 -0.29 0.95 0.04 -0.03 0.39 -0.38 -0.37 -0.7 -0.41
1.53 -1.02 -0.83 -1.32 -0.29 -0.99 -0.22 -1.33 1.26 -1.36 - 0.46 -0.52 0.68 0.53 -0.88 -2.52 - 0.15 - -0.07 - - -1.03 2.02 1.13 1.3 1.73 -1.09 -0.07 - -1.19
2.53 - - -1.06 1.15 - - - - - - - - -0.81 - - - 2.02 3.43 - 2.66 - - - - - 0.85 - - - - -
0.39 -0.24 0.14 0.16 -0.61 0.38 -0.23 0.76 0.74 0.5 0.67 0.23 -0.84 0.91 0.62 -0.76 -1.62 -1.25 -1.36 -0.52 1.46 -2.07 -2.44 -1.9 1.14 0.48 0.41 0.07 -1.57 -1.0 -1.84 -1.57
Smo410945 (PAP9)
 2.1 -1.9 0.72 -0.7 - -0.03 -1.77 0.8 2.81 -0.4 - 0.23 0.45 -1.88 -2.38 0.1 0.68 - 1.56 - - - 0.35 - - -0.68 - - 0.27 -0.68 -0.72 0.54
Smo411574 (CYP709B3)
 0.71 0.21 0.16 0.38 0.04 0.36 -0.09 0.26 0.2 0.84 0.22 0.64 -2.01 0.74 -0.04 -1.53 -2.94 -2.95 -2.35 -1.98 0.41 0.1 -1.99 -1.46 2.04 0.91 1.2 0.07 -2.98 -2.99 -3.91 -4.0
1.99 0.58 -0.48 0.24 1.33 0.45 -0.48 -0.25 -2.16 1.13 - -1.14 - -0.76 -0.61 -0.63 -0.77 -2.53 -0.88 - - - 0.23 -0.5 0.39 0.89 1.53 1.73 -1.51 -2.46 -0.92 -0.25
3.07 -1.2 -1.42 - - -0.55 - -1.23 - - - -1.06 - - - - - - -1.09 1.05 3.21 - - -1.31 3.0 0.04 - - - - - -
2.32 1.58 - - - - - - 1.36 2.42 1.51 - 1.7 - - - - 1.43 - - - - - - - 2.87 - - - - - -
Smo412723 (ELP3)
 -0.82 -0.58 - -2.58 2.04 0.28 -1.07 -2.49 0.97 0.33 -1.0 0.35 -2.41 -0.01 2.24 - -1.0 - 0.9 - 2.67 - -0.98 -2.49 - 0.73 1.0 - -2.77 -2.59 -2.65 -2.72
0.3 -0.23 -0.45 -0.02 -0.1 -0.18 -0.23 -0.27 0.1 0.22 0.0 -0.05 0.54 0.31 -0.06 -0.77 0.26 -0.89 -0.18 -3.49 2.13 0.62 -1.0 -0.43 1.45 -2.11 -2.65 -1.83 -0.27 -0.56 -0.07 -0.9
2.21 1.08 0.87 0.62 - 0.16 1.36 0.83 -0.71 0.66 -1.48 0.59 - -0.54 -2.02 - - - 0.97 - - - -1.46 -0.61 - 1.81 -0.1 - -0.56 1.03 - 0.39
Smo414626 (SBT5.4)
 5.0 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
4.0 - - - - - - - - - 2.84 0.21 - - 0.61 - - 1.79 - - - - - - - 1.44 - - - - - -
2.8 1.85 - 0.54 -0.21 1.08 - 0.71 2.25 -0.13 0.13 0.35 0.89 - - - - - 0.45 - - - - - 1.48 0.38 - - - - - -
-0.42 -0.02 0.51 0.35 0.37 0.3 0.57 0.72 0.45 0.52 0.47 -0.01 0.6 -0.83 0.53 -0.8 0.55 0.19 -1.52 0.54 0.74 0.58 -2.27 -2.16 -1.44 -0.93 -1.41 -1.9 -0.23 -0.4 -0.28 -0.52
1.94 - - 0.07 - -0.36 - -0.82 0.77 1.25 0.66 -0.65 -0.25 - - 0.82 1.26 0.64 - - - - 1.25 -0.33 - - 0.8 - 1.85 -0.4 1.15 0.5
-0.13 -0.35 0.32 0.41 0.66 0.32 0.25 0.6 0.43 0.67 0.31 0.56 -0.84 -0.64 0.1 -0.61 -1.48 -3.74 -0.94 -0.61 0.87 -0.02 -1.38 -1.06 1.89 0.41 -0.1 0.46 -1.7 -1.72 -2.38 -2.54
0.13 0.39 0.39 -0.15 0.53 0.22 0.45 -0.12 1.33 0.7 -0.21 -0.32 -0.82 0.99 0.36 -1.05 -2.16 -0.89 -1.76 -1.32 1.6 1.12 -3.0 -3.76 0.95 -0.99 -0.63 0.5 -1.53 -1.76 -2.21 -2.85
Smo419476 (DSO)
 - - - - - - - - 1.57 - - - 1.13 - - 1.35 - - 1.16 - - - - 1.15 4.28 - - -1.53 - - - -
3.83 0.18 - - - - 1.18 1.03 - -0.08 - - - - - - - - 0.37 - - - - - 3.14 - - - - 0.38 - -
1.34 0.53 -1.21 0.43 -2.46 0.46 0.55 0.26 -0.49 0.77 0.45 -0.43 - -3.18 -0.39 -1.85 0.58 -2.42 0.24 -1.03 -1.76 - -0.99 -0.09 2.25 -1.03 0.32 0.73 -0.35 0.39 -1.11 -0.86
1.08 0.99 -1.48 0.27 -0.2 0.07 0.5 0.31 0.54 -0.52 0.39 0.38 -3.26 0.21 0.6 -3.16 - 0.58 -2.38 -0.34 1.86 -0.48 - -3.46 1.18 0.47 0.06 1.3 -4.38 - - -
Smo423309 (PAP9)
 -0.17 0.77 -0.24 -0.21 2.39 -0.58 0.91 -0.53 0.35 0.79 0.69 0.22 - -1.99 -0.23 - - - -3.5 - 2.63 - - - - 1.55 1.23 -0.54 -3.56 - - -
Smo424862 (FIM1)
 1.7 0.14 0.13 0.54 -0.95 0.38 0.49 0.02 -1.56 -0.78 -1.1 -0.25 - 0.27 0.12 -2.11 -0.86 - -2.26 1.46 2.53 0.88 - - 0.69 -1.28 -0.38 0.98 - -2.25 - -
2.5 -0.36 - - - - - - - - - - - -0.21 - - - -0.22 0.92 - 2.07 3.62 - - - 1.94 - - - - - 0.74
1.85 2.47 -1.16 -2.6 -0.29 0.34 0.5 -3.35 -4.9 -8.54 -8.58 -7.36 -1.56 -22.74 -18.5 0.66 0.68 0.71 -1.1 -1.5 -0.32 1.23 -0.02 -1.62 2.32 -0.95 -0.4 -1.17 -0.64 -1.66 - -1.15
0.65 0.69 -0.7 0.12 0.4 0.38 0.04 0.68 0.71 0.62 0.75 0.39 -4.44 -8.29 -2.22 -1.39 -1.41 - 0.55 1.19 1.25 1.5 -0.81 0.17 -2.53 0.27 -1.26 -1.26 -1.6 -0.94 -0.81 -1.35
2.09 0.6 -0.96 0.19 -1.48 1.06 0.61 -0.94 -0.23 0.17 - 1.95 - -1.35 0.69 - - - -0.57 - - - -0.52 - 0.52 1.52 0.78 2.28 - - - -
0.28 -0.42 1.51 -1.52 -0.35 0.52 -0.03 -0.04 1.91 1.11 -0.1 1.68 -2.38 - -3.39 -3.42 -3.57 -1.38 - - - - -3.43 - 3.12 -0.1 -0.1 -0.49 -3.52 -3.54 -2.56 -3.63
0.28 -0.42 1.51 -1.52 -0.35 0.52 -0.03 -0.04 1.91 1.11 -0.1 1.68 -2.38 - -3.39 -3.42 -3.57 -1.38 - - - - -3.43 - 3.12 -0.1 -0.1 -0.49 -3.52 -3.54 -2.56 -3.63
2.2 -0.66 - 0.3 - - 1.16 -1.36 -1.9 -0.22 -0.43 -0.59 - - -1.2 -1.39 0.13 -0.35 0.46 - - - 1.06 - 2.44 -0.39 -0.09 0.73 0.4 1.48 0.45 -
Smo429997 (ELI3)
 1.17 -0.17 -0.47 0.2 -1.22 -0.35 -0.73 -0.18 0.84 0.58 0.9 0.85 -1.34 -1.01 -1.63 -0.82 -0.58 -3.54 0.15 -2.31 1.89 - -0.45 -0.13 0.73 1.02 0.32 -0.74 -0.1 -0.13 -1.29 -1.62
3.6 - - - - - - - - - - - - - - - - - - - 4.31 - - - - - - - - - - -
0.24 0.35 0.22 0.24 0.01 0.18 0.14 0.17 -0.1 0.82 0.48 0.38 -1.41 1.49 0.97 -1.1 -2.6 -0.63 -0.5 -11.01 -0.57 - -0.75 -0.66 1.0 1.26 0.26 1.04 -2.98 -1.68 -2.9 -2.49
2.23 0.91 1.01 0.33 - -0.15 -0.1 - 0.96 - 0.84 -0.15 -1.77 - 1.72 -0.56 -0.28 - -0.31 - - - - - 2.54 - - 0.94 -0.46 -0.31 -0.94 -
-0.66 -0.45 -0.21 0.16 0.02 0.05 0.18 0.29 0.31 0.4 0.14 -0.14 0.28 -0.14 0.61 -0.14 -0.53 -1.3 0.02 0.03 0.27 -1.55 -0.45 -0.42 1.3 0.92 -0.12 -0.15 -0.58 -0.56 -0.65 -0.32
3.37 1.64 2.21 2.68 - - - - - - - 1.9 - - 1.92 - - - - - - - - - - - - - - - - -
1.17 0.66 0.12 0.05 0.03 -0.06 -0.25 0.25 0.47 0.38 0.41 0.82 -1.23 -0.97 -1.09 -0.8 0.53 0.37 0.69 -4.29 -1.16 -4.86 0.28 -0.82 1.61 -1.72 -0.86 -0.84 0.1 0.1 -0.88 -1.09
0.19 0.08 -0.2 0.13 0.49 0.31 0.18 0.17 -0.05 0.48 -0.02 0.2 -0.01 0.17 0.06 0.2 -0.68 -0.72 0.43 -0.66 1.2 -0.12 -0.68 -0.41 -0.5 0.14 -0.8 -0.86 -0.14 -0.33 -0.04 -0.49
2.73 0.35 -1.42 0.04 -2.31 -2.31 0.33 -0.34 -1.76 -0.42 0.1 1.21 -1.04 -1.59 0.07 -0.12 -0.86 0.88 0.56 -1.59 - - -1.15 -1.16 - -2.36 -2.15 -0.14 -0.39 0.12 1.49 0.97
3.07 -1.17 - - 2.92 0.75 - 1.18 - -0.25 1.16 0.54 - -0.67 -1.23 -1.36 - - - - - - 0.8 -1.58 - - - - 0.45 -0.42 -1.27 0.12
2.35 - - - - 1.08 0.27 -0.86 1.13 0.72 0.51 - - - -1.26 - 0.1 - -0.02 - - - -1.65 -1.66 1.49 2.03 2.3 - 0.14 0.08 - -0.55
0.45 0.49 0.43 0.44 0.34 0.17 0.25 0.3 0.15 0.28 0.27 0.35 -2.45 0.63 -0.25 -0.55 0.24 -1.23 -0.9 -2.58 -1.19 -3.03 -0.14 -0.43 1.37 0.36 -0.05 -0.0 -0.11 0.01 -0.17 -1.07
1.92 -0.67 -0.88 0.78 - - - - - -0.86 -0.62 - 0.06 -0.68 - 0.19 -1.05 0.72 -1.06 - 3.19 - - - 1.6 0.66 0.96 - 0.06 - 0.61 -1.03

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.