Heatmap: Cluster_34 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
-0.33 -0.27 -0.22 -0.18 -0.06 -0.02 0.16 0.13 -0.03 -0.18 -0.28 -0.32 -0.01 -0.02 0.88 0.17 0.07 -0.35 0.1 0.6 -0.12 -0.15 0.02 0.02 0.17 -0.19 0.16 0.17 -0.05 -0.13 -0.21 -0.35
Smo108652 (CRR22)
0.17 0.03 0.04 -0.04 0.63 0.24 0.63 0.12 0.34 -0.65 0.1 -0.49 -0.92 0.52 1.68 -0.44 -0.11 -0.48 -0.18 0.49 -2.56 -1.68 -0.38 -0.82 -0.25 -0.21 0.71 0.71 -0.86 -0.72 -1.35 -0.65
Smo136241 (EMB2758)
-0.21 -1.07 -0.77 -0.6 0.0 0.64 0.85 0.9 1.06 0.7 0.34 0.03 -0.96 -1.56 2.02 -0.31 -0.56 -1.61 -0.5 -0.06 - - -0.59 -0.52 - -0.62 0.21 0.33 -0.04 -0.1 0.39 0.24
0.04 -0.31 -0.25 -0.21 -0.19 0.04 0.02 0.36 -0.06 0.55 0.15 0.14 0.18 1.31 1.49 0.33 -1.26 -3.12 -0.61 -0.2 -1.91 -1.17 -0.55 -0.7 -0.76 0.9 1.03 0.81 -1.38 -1.52 -1.11 -1.19
Smo1587 (CYP78A7)
-0.94 -0.64 -0.97 -1.04 -0.4 -0.53 -0.53 -0.11 -0.54 -0.41 -0.51 -0.61 1.8 1.11 1.81 1.76 -1.3 -1.11 1.68 -4.28 -1.82 -2.89 -0.81 -0.28 -0.89 0.01 -1.04 -0.47 -0.3 0.17 -1.09 -1.47
Smo166175 (RPN5B)
-0.17 -0.26 -0.27 -0.14 -0.06 -0.06 -0.04 0.05 -0.01 0.04 0.02 -0.12 0.08 0.96 1.31 0.11 -0.74 -1.05 -0.15 0.43 -0.77 -0.22 -0.6 -0.39 0.78 0.36 0.26 0.26 -0.73 -0.59 -0.66 -0.76
Smo167367 (NOP56)
-0.63 -0.4 -0.27 -0.13 0.03 0.2 0.31 0.09 -0.25 -0.42 -0.53 -0.73 -0.11 -0.35 1.69 0.13 -0.37 -0.66 0.27 0.62 -2.81 -0.49 -0.33 -0.25 -0.53 0.56 0.94 1.13 -0.4 -0.2 -1.17 -1.12
Smo228494 (SEC22)
0.03 -0.11 -0.23 -0.19 -0.2 -0.22 -0.33 -0.02 -0.2 -0.19 -0.09 -0.32 0.28 0.89 0.99 0.34 -0.63 -0.75 0.09 -0.06 0.01 -0.76 -0.05 0.17 -0.02 0.55 0.54 0.36 -0.63 -0.59 -0.43 -0.29
Smo234054 (HCC1)
-0.22 -0.41 -0.43 -0.07 -0.06 0.55 0.36 0.54 0.22 -0.15 -0.34 -0.27 -0.03 -0.49 1.11 -0.06 -0.28 -0.25 0.13 0.16 -0.24 -1.74 0.01 -0.01 0.15 -0.19 0.53 0.54 -0.35 -0.19 -0.54 -0.36
-0.47 -0.25 -0.35 -0.21 -0.09 -0.13 -0.07 -0.24 -0.54 -0.77 -0.54 -0.61 -0.03 1.23 1.53 -0.05 -0.47 -0.34 -0.2 0.67 -0.23 -0.08 -0.45 -0.32 -0.43 0.51 0.69 0.43 -0.81 -0.71 -0.27 -0.17
Smo36509 (SNP33)
-1.71 -1.81 -0.45 -1.05 -2.19 -1.16 -0.67 -0.52 -0.38 -1.9 -1.4 -1.63 1.04 -0.03 2.83 0.93 0.05 0.43 -0.35 1.49 0.94 1.64 -3.02 -3.64 -1.42 -3.09 -2.1 -1.34 -0.79 -0.47 -1.67 -1.21
-0.18 -0.34 -0.18 -0.16 0.21 -0.01 0.02 -0.4 -0.29 -0.68 -0.62 -0.79 -0.01 0.92 1.35 0.35 -0.46 -0.09 0.44 0.13 -0.73 -1.65 -0.08 0.14 -0.32 -0.16 0.73 0.55 -0.25 -0.13 -0.56 -0.15
- - - -1.32 - - -0.44 - -1.65 - -1.18 - 1.93 0.3 2.43 2.13 - 0.43 2.47 - - - - 0.34 - -0.14 -0.04 0.98 0.32 - -0.26 0.27
Smo403930 (CDT1)
-0.38 -0.31 -0.17 -0.08 0.28 0.14 0.28 0.36 0.46 0.29 0.48 -0.13 -0.12 -0.23 1.7 -0.2 -0.57 -0.93 -0.22 0.59 -0.91 -0.56 -0.46 -0.24 -0.38 0.12 -0.13 0.05 -0.49 -0.38 -0.72 -0.47
-2.03 -0.92 -1.36 -0.62 -0.75 -0.16 -0.81 -0.98 -2.8 -1.42 0.0 -0.72 0.11 0.05 2.68 1.01 -1.99 -2.64 0.09 1.23 0.05 -1.69 -1.12 -0.86 0.25 0.88 0.83 0.65 -1.34 -0.6 -1.25 -0.13
-0.49 -0.31 -0.02 -0.17 0.08 0.0 0.27 -0.74 -0.22 -0.22 -0.3 -0.24 -0.45 1.28 1.33 -0.22 -1.88 -3.16 0.74 1.26 -0.85 0.52 -1.95 -1.54 0.92 0.83 0.42 1.09 -2.48 -1.61 -4.14 -3.53
Smo406783 (PPR596)
-1.01 -0.47 -0.19 -0.0 0.45 0.47 0.47 -0.33 -0.79 -1.08 -1.24 -1.3 -0.4 -1.71 2.01 -0.38 -0.15 -0.55 0.23 1.14 -3.0 0.11 -0.37 -0.04 1.01 -0.33 0.72 0.87 -0.85 -0.46 -1.41 -1.4
-0.58 -0.3 -0.44 -0.07 -0.05 0.03 -0.14 -0.0 -0.14 -0.11 -0.09 -0.5 0.57 0.29 1.33 0.52 0.0 -0.79 0.46 0.67 -2.11 -0.07 -0.34 -0.16 -0.58 0.05 0.19 0.52 0.08 0.02 -1.0 -0.86
-0.76 -0.42 -0.13 -0.08 -0.32 -0.06 0.45 0.17 0.18 -0.91 -0.73 -0.5 -0.58 -0.9 1.97 -0.24 0.12 -0.34 0.4 1.04 -2.33 -2.46 -0.16 -0.31 -0.1 0.52 0.58 0.87 0.08 -0.13 -1.37 -2.33
-0.89 0.09 0.13 0.33 -0.91 - -0.05 -0.12 -1.24 0.28 -1.75 -1.59 -1.94 -0.57 2.55 -1.19 -1.46 - 0.72 2.06 - 1.28 -0.74 -2.15 -1.03 -0.05 0.28 1.05 -0.8 -1.49 -1.11 -0.85
-1.01 -0.48 -1.8 -1.52 -0.65 -0.6 -0.63 -2.05 -0.83 0.0 -0.53 -0.93 -1.22 -0.73 3.05 -0.74 -0.91 -0.92 0.95 3.02 -1.69 - -2.88 -2.16 -0.02 -0.74 -0.93 - -1.3 -1.37 -1.58 -1.84
-1.0 -1.44 -1.0 -0.92 -2.16 -1.01 -0.94 -0.88 -0.58 -1.27 -1.06 -1.36 -0.57 2.63 3.02 0.7 -1.8 -0.88 -1.17 1.46 -1.72 0.78 -2.07 -1.72 -1.67 -2.82 -0.5 -0.1 -2.17 -1.34 -2.11 -2.06
-0.9 -0.74 -0.46 -0.15 0.27 0.22 0.03 -0.45 -0.3 -0.13 -0.06 -0.51 -1.62 -3.06 1.87 -0.84 0.27 -0.59 -0.8 2.0 -0.38 1.4 -0.66 -1.52 -2.17 -0.44 0.49 0.91 -0.61 -0.16 -1.86 -2.61
Smo414001 (PAKRP1)
-0.58 -0.55 -0.14 -0.29 -0.2 -0.23 -0.02 -0.59 -0.09 -0.37 -0.22 -0.6 -0.72 -1.5 2.7 -0.65 0.23 -0.31 -0.43 2.25 -1.27 0.97 -1.77 -1.85 -1.53 -1.87 -1.03 -0.52 -0.7 -0.57 -1.47 -1.62
-0.24 0.15 0.09 0.17 0.03 0.18 0.08 -0.49 0.4 -0.17 -0.18 -0.42 -0.97 -1.44 2.53 -0.1 -0.13 -0.86 -0.15 1.01 -0.63 1.1 -2.41 -2.8 -2.75 -0.59 0.02 0.47 -0.89 -0.44 -2.07 -2.07
-1.84 -1.54 -1.71 -0.33 0.21 -0.86 -1.69 -0.56 -0.88 -0.79 -1.29 -1.45 1.02 2.02 2.89 1.15 -2.74 - 0.14 1.76 -1.0 -1.92 -2.49 -1.46 -1.17 -0.42 0.04 0.4 -3.25 -2.73 -2.84 -3.49
-1.35 -0.7 -2.73 -0.38 -0.01 -0.8 -1.21 -1.09 -0.67 -1.15 -1.21 -0.97 1.35 1.38 2.56 1.92 -2.4 -3.84 1.65 0.95 -2.49 -1.15 -2.03 -1.04 -0.61 -0.29 -0.18 -0.26 -2.39 -1.36 -2.85 -2.99
Smo417560 (MRP5)
-1.31 -1.56 -2.13 -0.62 -1.05 -0.63 -0.26 -0.59 -1.05 -1.26 -0.67 -0.57 1.77 1.64 2.67 0.88 -1.87 0.31 2.15 -0.99 - - -1.19 -1.66 -0.66 -1.47 -0.21 -0.36 -1.91 -1.56 -2.48 -2.63
-0.78 -1.16 -1.34 -0.28 -0.69 -0.2 -0.37 -0.29 -0.06 0.18 0.24 -0.27 0.52 0.99 1.49 0.37 -1.07 -0.89 0.21 0.92 -0.37 0.48 0.08 0.59 0.08 -0.4 -0.34 -0.34 -0.72 -0.33 -0.51 -0.39
Smo418055 (MK)
0.02 0.14 -0.46 -0.02 -0.34 0.08 -0.07 -0.16 0.33 0.02 -0.16 -0.04 -0.64 0.95 1.66 -0.41 -1.61 -1.42 -0.85 1.29 0.32 -0.22 -1.14 -0.95 1.09 0.6 0.17 0.03 -1.38 -1.01 -2.43 -2.13
Smo418913 (TSK)
-0.72 0.03 0.05 0.26 0.32 0.41 0.32 -0.28 -0.03 -0.6 -0.45 -0.64 -1.36 -1.41 2.23 -0.74 0.05 -1.46 -0.32 2.08 -2.0 1.26 -1.35 -2.08 -1.62 -1.42 -0.23 0.24 -0.64 -0.16 -2.42 -1.9
-0.78 -0.08 -0.19 0.28 -0.17 0.59 -0.05 -0.25 -0.78 0.14 -0.35 -0.26 -0.97 1.54 1.62 -1.03 -3.42 - -2.43 2.17 -0.82 1.23 -2.24 -1.38 0.84 0.48 -0.34 0.1 -2.07 -3.39 -2.82 -3.14
-1.22 -1.81 -0.87 -0.67 -0.72 -0.78 -0.62 -2.39 -1.97 -2.39 -2.37 -1.56 1.6 1.9 2.09 0.44 -0.55 -1.43 1.16 0.38 0.05 0.08 -0.86 -0.97 -0.1 -1.72 1.01 0.96 -1.8 -0.52 -1.53 -1.19
-0.55 -0.55 -1.07 -0.6 -0.6 -0.65 -0.57 -0.95 -0.14 -1.1 -0.71 -1.11 0.69 1.49 2.15 0.83 -0.89 1.03 0.1 0.12 -0.65 - -0.38 0.36 0.83 -0.58 0.11 -0.09 -1.23 -0.94 -0.98 -0.86
-0.25 -0.32 -1.96 0.05 -0.89 0.03 0.3 -0.51 0.73 -0.16 0.16 0.2 -0.58 1.8 2.16 -0.63 -3.07 -3.99 -2.33 0.67 -3.28 -3.24 -1.24 -2.23 -3.58 0.79 1.66 1.65 -4.08 -2.27 -2.58 -2.91
Smo431276 (HCT)
-1.32 -1.0 -0.36 -0.97 -0.07 -0.48 -0.81 -1.74 -1.36 -1.83 -0.86 -1.21 -0.3 0.64 3.12 0.44 -1.3 1.15 -1.95 2.22 -2.84 1.41 -1.24 -0.99 -3.74 -3.23 -2.12 -2.65 -2.0 -1.22 -1.94 -1.32
Smo438068 (MCM6)
-0.41 -0.04 -0.23 0.16 0.25 0.12 0.13 -0.28 -0.24 -0.36 -0.36 -0.38 -0.14 -0.06 1.67 0.13 0.33 -0.61 -0.19 1.15 -0.74 0.35 -0.62 -0.67 0.12 -0.21 0.24 -0.03 -0.39 -0.14 -1.16 -1.31
Smo440021 (RPA2)
-0.25 -0.01 0.04 0.18 0.41 0.25 0.35 0.3 0.17 0.04 0.1 -0.07 -1.24 -1.3 1.53 -0.95 -0.48 -1.29 -0.56 1.14 -0.96 0.89 -0.84 -1.13 0.19 0.04 0.54 0.32 -0.69 -0.63 -0.82 -1.1
Smo442045 (RMI1)
-0.55 -0.35 -0.84 -0.31 -0.38 0.15 0.35 0.13 -0.74 -0.37 -0.68 -0.46 -1.08 0.39 1.99 -0.78 -1.35 -2.45 -1.14 2.29 0.11 1.43 -1.52 -1.67 -1.01 -1.35 1.09 0.68 -2.12 -1.98 -2.3 -2.38
Smo442428 (CYCA1;1)
-0.48 -0.38 -0.2 -0.23 -0.16 0.03 0.08 -0.67 -0.07 -0.8 -0.02 -0.79 -0.75 -2.81 2.81 0.15 0.05 -1.05 -0.89 1.56 -1.62 1.63 -1.57 -1.62 -2.16 -2.05 -0.76 -0.49 -0.95 -0.3 -1.27 -0.66
Smo443310 (ASE2)
-0.39 0.12 0.09 -0.16 0.05 0.18 0.25 0.2 0.06 -0.15 -0.05 -0.22 -0.3 -0.98 1.11 -0.07 -0.53 -1.02 0.28 0.16 -3.04 -0.06 -0.55 -0.6 0.25 1.16 0.82 0.99 -0.14 -0.13 -1.65 -2.17
Smo446235 (MEI1)
-0.34 -0.27 -0.14 -0.09 0.03 -0.1 -0.1 0.05 -0.04 0.02 -0.01 -0.11 -0.32 -0.31 1.26 0.13 -0.36 -1.26 0.57 0.64 -0.62 -0.09 -0.32 -0.39 0.44 0.86 0.14 0.3 -0.34 -0.23 -0.74 -1.09
Smo52147 (OTP84)
-0.42 -1.09 -0.48 0.17 0.64 0.63 1.21 0.31 0.14 -0.34 -0.16 -0.5 -0.8 -1.85 2.04 -0.24 -0.18 -0.05 0.05 0.83 - -4.09 -0.62 -0.38 -2.01 -0.5 1.0 0.31 -0.95 -0.37 -0.55 -0.62
Smo54873 (KCO5)
-1.44 -0.52 -2.12 -0.52 0.44 -0.45 -1.69 -1.76 -1.48 -0.09 0.26 -0.95 0.59 0.22 2.78 0.96 -1.46 -0.36 2.31 - - -3.16 -1.04 -0.16 -1.22 -0.66 -0.81 -0.89 -0.85 -0.59 -1.26 0.5
-1.02 -0.59 -0.71 -0.21 -0.02 -0.05 -0.34 -0.02 -0.35 -0.23 0.07 -0.51 -1.11 0.98 2.61 0.08 -2.98 0.98 0.4 2.21 -3.4 -1.68 -3.74 -3.45 -5.26 -1.0 0.09 0.12 -3.01 -2.33 -1.36 -0.71
-1.41 -1.83 -2.31 -1.37 -1.9 -0.57 -0.59 -0.8 -0.71 -0.94 -0.68 -1.19 1.07 1.34 2.37 1.49 -1.46 -1.61 -0.83 1.55 -1.09 1.13 -1.41 -1.6 0.12 0.06 0.36 0.32 -1.59 -1.03 -1.39 -1.43
Smo79780 (EBP1)
-0.43 -0.11 -0.19 -0.01 -0.09 0.1 0.08 -0.07 -0.33 -0.38 -0.62 -0.63 0.27 0.16 1.36 0.34 -0.18 -0.27 0.48 -0.08 -2.57 -0.72 -0.03 0.14 0.23 0.31 0.42 0.33 -0.28 -0.28 -0.01 -0.21
Smo81450 (PSF3)
-0.52 0.29 -1.37 0.02 -0.03 -0.07 0.11 -0.7 0.15 -0.81 0.01 -0.7 -0.93 -0.35 2.85 0.7 -0.36 -1.82 -1.01 1.08 -0.25 1.78 -1.23 -2.02 -2.19 -1.44 -1.87 -1.44 -0.64 -0.37 -2.4 -2.79
Smo81986 (CBF5)
-0.14 0.09 0.05 0.15 0.45 0.74 0.46 0.08 -0.3 -0.44 -0.59 -0.65 -0.35 -1.14 1.79 0.03 -0.36 -0.19 0.12 1.35 -1.87 0.07 -0.61 -0.46 -1.87 -0.55 0.58 0.48 -0.62 -0.54 -1.54 -1.6
-0.37 -0.3 -0.12 -0.2 0.03 -0.17 0.47 -1.01 0.32 -0.05 -0.13 -0.25 -0.92 -1.92 2.8 -0.89 0.04 0.02 -2.22 2.5 -4.46 0.78 -4.6 -3.17 -0.79 -3.38 -1.9 -0.97 -0.91 -1.04 -2.69 -3.84
-0.94 -0.98 -0.73 -0.53 -0.67 -0.56 -0.46 -0.61 -0.36 -0.62 -0.52 -0.74 -1.08 -0.77 2.9 -0.28 -0.3 -1.03 -0.94 2.07 -4.49 2.01 -3.58 -2.94 -2.12 -0.69 -0.68 -0.37 -0.98 -0.79 -0.74 -0.57
-0.44 -0.37 -0.33 -0.38 -0.34 -0.11 -0.02 -0.14 -0.32 -0.23 -0.35 -0.52 0.14 0.87 1.65 0.26 -0.69 -1.1 0.19 1.2 -0.08 -0.45 -0.84 -0.58 0.22 -0.24 0.5 0.5 -0.86 -0.71 -0.31 -0.57
Smo98462 (RECQI1)
-0.56 0.19 -0.66 0.05 0.05 0.2 -0.45 0.05 0.01 -0.23 -0.13 -0.81 -0.34 -0.31 2.68 0.6 -0.36 -2.14 -1.39 1.36 0.72 0.65 -1.55 -2.12 -2.04 -0.25 -0.72 0.24 -1.21 -1.02 -3.85 -3.5
-0.13 0.07 -0.08 0.12 0.24 0.25 0.07 0.2 0.04 -0.17 -0.25 -0.32 -0.17 -0.28 0.93 0.15 -0.11 -0.77 0.3 0.44 -1.36 -1.44 -0.37 -0.41 -0.15 0.64 0.7 0.85 -0.21 -0.09 -0.97 -0.88

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.