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Heatmap: Cluster_34 (HCCA)

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Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
440.51 461.84 478.2 489.45 530.89 547.08 621.88 606.93 542.87 489.14 457.06 443.95 551.77 547.78 1021.34 626.75 583.47 435.11 594.52 842.54 510.62 498.9 561.41 564.18 624.39 488.16 622.34 624.3 535.75 507.08 480.52 435.35
Smo108652 (CRR22)
 1.42 1.29 1.3 1.23 1.96 1.49 1.96 1.38 1.6 0.81 1.36 0.9 0.67 1.82 4.04 0.93 1.17 0.91 1.11 1.78 0.21 0.39 0.97 0.72 1.07 1.09 2.08 2.07 0.7 0.77 0.5 0.81
Smo136241 (EMB2758)
 2.95 1.62 2.0 2.25 3.42 5.32 6.16 6.36 7.09 5.52 4.33 3.47 1.75 1.16 13.78 2.75 2.31 1.12 2.41 3.27 0.0 0.0 2.27 2.37 0.0 2.22 3.94 4.28 3.31 3.17 4.48 4.04
3.3 2.58 2.7 2.77 2.81 3.29 3.25 4.13 3.09 4.7 3.56 3.54 3.64 7.93 9.03 4.03 1.34 0.37 2.11 2.79 0.85 1.42 2.19 1.98 1.89 5.98 6.53 5.63 1.23 1.12 1.49 1.41
Smo1587 (CYP78A7)
 1.57 1.94 1.54 1.46 2.27 2.08 2.09 2.78 2.07 2.26 2.11 1.98 10.48 6.49 10.55 10.17 1.23 1.39 9.62 0.16 0.85 0.41 1.72 2.47 1.63 3.03 1.47 2.18 2.44 3.39 1.41 1.09
Smo166175 (RPN5B)
 99.19 93.02 92.08 100.9 106.68 106.78 108.02 115.1 110.49 114.38 112.95 102.62 117.63 216.64 275.96 119.65 66.76 53.88 100.47 150.23 65.25 95.4 73.61 85.14 190.84 142.34 132.78 132.99 66.82 74.1 70.28 65.79
Smo167367 (NOP56)
 44.54 52.5 57.25 63.32 70.43 79.5 85.96 73.6 58.19 51.57 47.79 41.68 63.87 54.34 223.05 75.45 53.58 43.74 83.07 106.56 9.88 49.25 55.05 58.03 47.95 101.72 132.7 151.61 52.51 60.24 30.69 31.86
Smo228494 (SEC22)
 67.55 61.53 56.44 58.15 57.83 57.03 52.77 65.46 57.88 57.99 62.32 53.19 80.49 122.51 132.11 83.86 42.89 39.44 70.59 63.55 67.01 39.09 63.91 74.38 65.64 97.1 96.27 85.02 42.91 44.22 49.21 54.2
Smo234054 (HCC1)
 21.83 19.14 18.85 24.33 24.45 37.43 32.68 36.93 29.74 22.95 20.1 21.17 24.87 18.08 55.02 24.47 21.03 21.35 27.98 28.44 21.58 7.64 25.7 25.35 28.36 22.3 36.78 37.07 20.02 22.31 17.53 19.88
83.68 97.52 90.8 100.19 108.74 105.3 110.43 97.56 79.39 67.54 79.64 75.82 112.98 271.23 333.37 111.56 83.23 91.08 100.8 184.12 98.55 109.48 84.34 92.51 85.92 164.68 186.96 155.38 66.06 70.51 95.91 102.97
Smo36509 (SNP33)
 0.98 0.92 2.36 1.56 0.71 1.44 2.03 2.26 2.47 0.87 1.22 1.04 6.63 3.17 23.01 6.17 3.34 4.36 2.53 9.09 6.17 10.07 0.4 0.26 1.21 0.38 0.75 1.28 1.87 2.34 1.01 1.39
24.76 22.28 24.8 25.23 32.54 27.99 28.52 21.31 23.07 17.53 18.35 16.28 28.01 53.23 71.46 35.74 20.39 26.33 38.15 30.68 17.0 8.94 26.66 30.98 22.47 25.1 46.68 41.16 23.59 25.71 19.12 25.4
0.0 0.0 0.0 0.02 0.0 0.0 0.04 0.0 0.02 0.0 0.02 0.0 0.2 0.07 0.29 0.23 0.0 0.07 0.3 0.0 0.0 0.0 0.0 0.07 0.0 0.05 0.05 0.1 0.07 0.0 0.04 0.06
Smo403930 (CDT1)
 13.57 14.21 15.72 16.68 21.37 19.47 21.47 22.65 24.17 21.53 24.56 16.14 16.24 15.03 57.36 15.35 11.92 9.27 15.18 26.53 9.4 11.92 12.8 14.95 13.54 19.18 16.1 18.25 12.55 13.59 10.7 12.74
0.18 0.39 0.29 0.48 0.44 0.66 0.42 0.37 0.1 0.27 0.73 0.45 0.79 0.76 4.7 1.48 0.18 0.12 0.78 1.72 0.76 0.23 0.34 0.4 0.87 1.35 1.3 1.15 0.29 0.48 0.31 0.67
1.24 1.4 1.72 1.55 1.84 1.75 2.1 1.04 1.5 1.5 1.42 1.47 1.28 4.23 4.37 1.49 0.47 0.2 2.91 4.18 0.97 2.5 0.45 0.6 3.31 3.09 2.34 3.71 0.31 0.57 0.1 0.15
Smo406783 (PPR596)
 17.72 25.81 31.2 35.61 48.88 49.32 49.5 28.44 20.67 16.87 15.15 14.53 27.06 10.89 143.69 27.48 32.08 24.42 41.79 78.36 4.45 38.6 27.67 34.65 71.59 28.47 58.93 65.05 19.83 25.87 13.39 13.49
9.34 11.31 10.3 13.35 13.48 14.3 12.68 13.93 12.64 12.91 13.09 9.87 20.73 17.11 35.0 20.07 14.0 8.06 19.18 22.21 3.23 13.33 11.04 12.54 9.37 14.48 15.92 20.02 14.72 14.12 6.97 7.71
3.42 4.33 5.31 5.51 4.65 5.58 7.92 6.53 6.57 3.09 3.51 4.12 3.88 3.12 22.83 4.92 6.33 4.6 7.68 11.97 1.16 1.05 5.21 4.69 5.42 8.3 8.7 10.6 6.15 5.32 2.25 1.16
0.15 0.3 0.31 0.35 0.15 0.0 0.27 0.26 0.12 0.34 0.08 0.09 0.07 0.19 1.66 0.12 0.1 0.0 0.47 1.18 0.0 0.68 0.17 0.06 0.14 0.27 0.34 0.58 0.16 0.1 0.13 0.16
0.19 0.27 0.11 0.13 0.24 0.25 0.25 0.09 0.22 0.38 0.26 0.2 0.16 0.23 3.16 0.23 0.2 0.2 0.74 3.1 0.12 0.0 0.05 0.09 0.38 0.23 0.2 0.0 0.16 0.15 0.13 0.11
0.64 0.47 0.64 0.68 0.29 0.63 0.67 0.69 0.86 0.53 0.62 0.5 0.86 7.93 10.38 2.08 0.37 0.7 0.57 3.54 0.39 2.2 0.31 0.39 0.4 0.18 0.91 1.19 0.29 0.5 0.3 0.31
1.24 1.39 1.7 2.1 2.81 2.71 2.38 1.71 1.89 2.14 2.24 1.64 0.76 0.28 8.52 1.3 2.81 1.55 1.34 9.32 1.79 6.17 1.47 0.81 0.52 1.72 3.26 4.38 1.53 2.08 0.64 0.38
Smo414001 (PAKRP1)
 3.62 3.69 4.91 4.43 4.7 4.6 5.34 3.6 5.09 4.18 4.65 3.56 3.29 1.92 35.17 3.46 6.33 4.37 4.03 25.81 2.24 10.6 1.58 1.51 1.87 1.49 2.65 3.78 3.34 3.65 1.95 1.77
1.45 1.91 1.84 1.94 1.76 1.95 1.82 1.23 2.27 1.53 1.52 1.29 0.88 0.64 9.98 1.6 1.57 0.95 1.55 3.46 1.11 3.7 0.32 0.25 0.26 1.14 1.75 2.38 0.93 1.27 0.41 0.41
1.56 1.91 1.7 4.44 6.44 3.08 1.73 3.78 3.03 3.23 2.28 2.05 11.33 22.55 41.29 12.38 0.84 0.0 6.14 18.87 2.79 1.47 0.99 2.03 2.47 4.17 5.73 7.34 0.59 0.84 0.78 0.5
0.53 0.83 0.2 1.03 1.34 0.77 0.58 0.63 0.85 0.61 0.58 0.69 3.43 3.49 7.92 5.09 0.25 0.09 4.23 2.6 0.24 0.61 0.33 0.65 0.88 1.1 1.19 1.13 0.26 0.52 0.19 0.17
Smo417560 (MRP5)
 0.17 0.15 0.1 0.28 0.21 0.28 0.36 0.29 0.21 0.18 0.27 0.29 1.48 1.35 2.76 0.8 0.12 0.53 1.92 0.22 0.0 0.0 0.19 0.14 0.27 0.16 0.37 0.34 0.12 0.15 0.08 0.07
1.64 1.26 1.11 2.33 1.75 2.45 2.18 2.31 2.7 3.2 3.33 2.33 4.04 5.6 7.92 3.64 1.34 1.52 3.25 5.33 2.18 3.95 2.99 4.25 2.98 2.14 2.23 2.23 1.71 2.25 1.98 2.15
Smo418055 (MK)
 13.91 15.11 9.99 13.59 10.82 14.47 13.06 12.3 17.28 13.95 12.34 13.38 8.83 26.48 43.33 10.33 4.51 5.14 7.6 33.47 17.16 11.8 6.24 7.11 29.2 20.86 15.5 14.02 5.27 6.82 2.55 3.14
Smo418913 (TSK)
 1.48 2.47 2.51 2.91 3.02 3.22 3.04 2.0 2.38 1.6 1.78 1.56 0.95 0.92 11.35 1.45 2.51 0.88 1.94 10.29 0.61 5.8 0.95 0.57 0.79 0.9 2.07 2.86 1.55 2.17 0.45 0.65
1.85 3.0 2.78 3.84 2.81 4.78 3.07 2.66 1.84 3.5 2.49 2.65 1.61 9.22 9.72 1.55 0.3 0.0 0.59 14.23 1.8 7.45 0.67 1.22 5.67 4.41 2.5 3.41 0.76 0.3 0.45 0.36
0.85 0.56 1.08 1.24 1.2 1.15 1.29 0.38 0.5 0.38 0.38 0.67 5.97 7.38 8.43 2.68 1.35 0.73 4.41 2.58 2.04 2.09 1.09 1.01 1.84 0.6 3.97 3.85 0.57 1.38 0.68 0.86
1.13 1.13 0.79 1.09 1.09 1.06 1.11 0.85 1.5 0.77 1.01 0.77 2.66 4.64 7.35 2.94 0.89 3.37 1.77 1.79 1.05 0.0 1.26 2.12 2.94 1.1 1.78 1.55 0.7 0.86 0.84 0.91
0.6 0.57 0.18 0.74 0.39 0.73 0.88 0.5 1.19 0.64 0.8 0.82 0.48 2.49 3.2 0.46 0.09 0.05 0.14 1.14 0.07 0.08 0.3 0.15 0.06 1.24 2.27 2.25 0.04 0.15 0.12 0.1
Smo431276 (HCT)
 0.97 1.21 1.89 1.24 2.31 1.74 1.38 0.72 0.94 0.68 1.33 1.05 1.97 3.77 21.1 3.29 0.98 5.38 0.63 11.26 0.34 6.45 1.03 1.22 0.18 0.26 0.56 0.39 0.61 1.04 0.63 0.97
Smo438068 (MCM6)
 6.93 8.98 7.85 10.3 10.97 10.07 10.14 7.6 7.79 7.2 7.18 7.1 8.38 8.86 29.43 10.08 11.61 6.06 8.11 20.44 5.51 11.75 6.02 5.81 10.04 7.96 10.93 9.06 7.05 8.35 4.14 3.73
Smo440021 (RPA2)
 21.47 25.38 26.26 29.0 33.88 30.43 32.69 31.55 28.69 26.29 27.39 24.37 10.82 10.4 73.96 13.28 18.28 10.46 17.29 56.56 13.12 47.41 14.27 11.66 29.22 26.26 37.31 32.03 15.81 16.52 14.46 11.92
Smo442045 (RMI1)
 1.83 2.11 1.5 2.17 2.06 2.97 3.41 2.93 1.61 2.08 1.68 1.95 1.26 3.5 10.69 1.56 1.05 0.49 1.21 13.14 2.9 7.23 0.93 0.84 1.33 1.05 5.7 4.29 0.62 0.68 0.54 0.52
Smo442428 (CYCA1;1)
 3.17 3.4 3.86 3.77 3.95 4.52 4.69 2.78 4.22 2.54 4.38 2.57 2.63 0.63 31.08 4.92 4.6 2.14 2.39 13.06 1.44 13.76 1.49 1.44 0.99 1.07 2.62 3.16 2.29 3.6 1.83 2.81
Smo443310 (ASE2)
 5.14 7.33 7.19 6.06 6.98 7.64 8.06 7.76 7.04 6.09 6.54 5.82 5.49 3.43 14.6 6.44 4.7 3.32 8.24 7.58 0.82 6.49 4.61 4.47 8.02 15.13 11.98 13.42 6.15 6.18 2.16 1.5
Smo446235 (MEI1)
 11.34 11.89 12.97 13.45 14.6 13.32 13.38 14.82 13.89 14.54 14.23 13.24 11.48 11.55 34.31 15.64 11.15 5.99 21.28 22.33 9.31 13.5 11.46 10.91 19.49 25.9 15.81 17.63 11.3 12.19 8.56 6.73
Smo52147 (OTP84)
 0.95 0.59 0.91 1.42 1.98 1.96 2.94 1.57 1.4 1.0 1.13 0.9 0.73 0.35 5.21 1.07 1.12 1.22 1.31 2.26 0.0 0.07 0.83 0.97 0.32 0.9 2.54 1.57 0.66 0.98 0.87 0.83
Smo54873 (KCO5)
 0.24 0.45 0.15 0.45 0.87 0.47 0.2 0.19 0.23 0.61 0.77 0.33 0.97 0.75 4.43 1.25 0.23 0.5 3.2 0.0 0.0 0.07 0.31 0.58 0.28 0.41 0.37 0.35 0.36 0.43 0.27 0.91
0.2 0.27 0.25 0.35 0.4 0.39 0.32 0.4 0.32 0.35 0.43 0.29 0.19 0.81 2.49 0.43 0.05 0.8 0.54 1.89 0.04 0.13 0.03 0.04 0.01 0.2 0.43 0.44 0.05 0.08 0.16 0.25
1.97 1.47 1.06 2.03 1.41 3.53 3.48 3.01 3.21 2.74 3.28 2.29 11.0 13.27 27.06 14.79 1.9 1.72 2.95 15.36 2.47 11.51 1.98 1.73 5.7 5.48 6.75 6.55 1.75 2.57 2.0 1.94
Smo79780 (EBP1)
 101.86 127.85 120.61 136.36 129.65 147.34 145.48 131.45 109.26 105.84 89.58 88.79 165.6 153.8 353.63 174.7 121.39 113.79 192.31 129.99 23.18 83.4 135.18 151.77 161.95 170.46 184.22 172.54 113.08 112.99 136.93 118.68
Smo81450 (PSF3)
 1.7 2.96 0.94 2.46 2.38 2.31 2.61 1.49 2.69 1.38 2.44 1.49 1.27 1.91 17.54 3.94 1.89 0.69 1.2 5.12 2.04 8.34 1.03 0.6 0.53 0.9 0.66 0.89 1.56 1.88 0.46 0.35
Smo81986 (CBF5)
 27.36 32.21 31.28 33.48 41.42 50.37 41.71 31.9 24.53 22.32 20.02 19.2 23.77 13.76 104.46 30.95 23.47 26.55 32.91 76.81 8.27 31.71 19.83 21.93 8.29 20.69 45.21 42.05 19.6 20.74 10.41 9.96
1.22 1.27 1.44 1.37 1.61 1.4 2.18 0.78 1.96 1.52 1.44 1.32 0.83 0.42 10.96 0.85 1.62 1.6 0.34 8.92 0.07 2.7 0.06 0.17 0.91 0.15 0.42 0.8 0.84 0.77 0.24 0.11
5.58 5.41 6.46 7.42 6.72 7.27 7.77 7.01 8.36 6.94 7.46 6.39 5.06 6.28 79.63 8.81 8.7 5.23 5.58 44.9 0.48 43.2 0.89 1.39 2.46 6.64 6.69 8.29 5.43 6.17 6.4 7.2
8.25 8.66 8.88 8.59 8.83 10.4 11.06 10.15 8.98 9.52 8.78 7.83 12.32 20.4 35.24 13.42 6.96 5.22 12.73 25.69 10.62 8.17 6.24 7.47 13.05 9.45 15.86 15.85 6.18 6.84 9.06 7.53
Smo98462 (RECQI1)
 1.0 1.68 0.94 1.53 1.53 1.69 1.08 1.53 1.49 1.26 1.35 0.84 1.17 1.19 9.43 2.24 1.15 0.33 0.56 3.78 2.43 2.31 0.5 0.34 0.36 1.24 0.89 1.74 0.64 0.73 0.1 0.13
9.5 10.89 9.84 11.25 12.24 12.36 10.91 11.95 10.69 9.23 8.74 8.32 9.23 8.55 19.8 11.48 9.62 6.08 12.74 14.13 4.05 3.83 8.06 7.8 9.35 16.22 16.92 18.78 8.98 9.75 5.28 5.63

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)