Coexpression cluster: Cluster_5 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 27.91% (12/43) 7.46 0.0 0.0
GO:0034062 5'-3' RNA polymerase activity 27.91% (12/43) 7.31 0.0 0.0
GO:0097747 RNA polymerase activity 27.91% (12/43) 7.31 0.0 0.0
GO:0006351 DNA-templated transcription 27.91% (12/43) 6.43 0.0 0.0
GO:0097659 nucleic acid-templated transcription 27.91% (12/43) 6.43 0.0 0.0
GO:0016779 nucleotidyltransferase activity 27.91% (12/43) 6.41 0.0 0.0
GO:0032774 RNA biosynthetic process 27.91% (12/43) 6.06 0.0 0.0
GO:0009059 macromolecule biosynthetic process 37.21% (16/43) 4.55 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 37.21% (16/43) 4.39 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 27.91% (12/43) 5.51 0.0 0.0
GO:0034654 nucleobase-containing compound biosynthetic process 27.91% (12/43) 5.49 0.0 0.0
GO:0018130 heterocycle biosynthetic process 27.91% (12/43) 5.23 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 27.91% (12/43) 5.24 0.0 0.0
GO:0140640 catalytic activity, acting on a nucleic acid 27.91% (12/43) 5.1 0.0 0.0
GO:1901362 organic cyclic compound biosynthetic process 27.91% (12/43) 5.07 0.0 0.0
GO:0044249 cellular biosynthetic process 37.21% (16/43) 3.95 0.0 0.0
GO:1901576 organic substance biosynthetic process 37.21% (16/43) 3.87 0.0 0.0
GO:0009058 biosynthetic process 37.21% (16/43) 3.72 0.0 0.0
GO:0009507 chloroplast 18.6% (8/43) 6.54 0.0 0.0
GO:0009536 plastid 18.6% (8/43) 6.54 0.0 0.0
GO:0016070 RNA metabolic process 27.91% (12/43) 4.55 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 37.21% (16/43) 3.55 0.0 0.0
GO:0090304 nucleic acid metabolic process 27.91% (12/43) 4.19 0.0 0.0
GO:0043229 intracellular organelle 30.23% (13/43) 3.82 0.0 0.0
GO:0043226 organelle 30.23% (13/43) 3.82 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 27.91% (12/43) 3.79 0.0 0.0
GO:0046483 heterocycle metabolic process 27.91% (12/43) 3.68 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 27.91% (12/43) 3.67 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 27.91% (12/43) 3.63 0.0 0.0
GO:0003677 DNA binding 27.91% (12/43) 3.33 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 18.6% (8/43) 4.31 0.0 0.0
GO:0043227 membrane-bounded organelle 18.6% (8/43) 4.31 0.0 0.0
GO:0097159 organic cyclic compound binding 46.51% (20/43) 1.92 0.0 0.0
GO:1901363 heterocyclic compound binding 46.51% (20/43) 1.92 0.0 0.0
GO:0016772 transferase activity, transferring phosphorus-containing groups 27.91% (12/43) 2.87 0.0 0.0
GO:0043170 macromolecule metabolic process 37.21% (16/43) 2.26 0.0 0.0
GO:0003676 nucleic acid binding 30.23% (13/43) 2.61 0.0 0.0
GO:0006807 nitrogen compound metabolic process 37.21% (16/43) 2.13 0.0 1e-06
GO:0110165 cellular anatomical entity 30.23% (13/43) 2.5 0.0 1e-06
GO:0044237 cellular metabolic process 37.21% (16/43) 2.12 0.0 1e-06
GO:0044238 primary metabolic process 37.21% (16/43) 1.84 3e-06 7e-06
GO:0005575 cellular_component 30.23% (13/43) 2.17 3e-06 7e-06
GO:0071704 organic substance metabolic process 37.21% (16/43) 1.78 5e-06 1.1e-05
GO:0008152 metabolic process 37.21% (16/43) 1.65 1.7e-05 3.6e-05
GO:0016740 transferase activity 27.91% (12/43) 2.02 2.2e-05 4.7e-05
GO:0009987 cellular process 37.21% (16/43) 1.55 4.1e-05 8.5e-05
GO:0005488 binding 46.51% (20/43) 1.22 8e-05 0.000163
GO:0043228 non-membrane-bounded organelle 11.63% (5/43) 3.28 0.000159 0.000311
GO:0043232 intracellular non-membrane-bounded organelle 11.63% (5/43) 3.28 0.000159 0.000311
GO:0005524 ATP binding 18.6% (8/43) 2.12 0.000412 0.000791
GO:0005840 ribosome 9.3% (4/43) 3.24 0.000837 0.001575
GO:0043604 amide biosynthetic process 9.3% (4/43) 3.18 0.000984 0.001658
GO:0032559 adenyl ribonucleotide binding 18.6% (8/43) 1.93 0.00098 0.00168
GO:0035639 purine ribonucleoside triphosphate binding 18.6% (8/43) 1.94 0.000968 0.00169
GO:0006412 translation 9.3% (4/43) 3.2 0.000923 0.001705
GO:0043043 peptide biosynthetic process 9.3% (4/43) 3.19 0.000964 0.001713
GO:0003735 structural constituent of ribosome 9.3% (4/43) 3.19 0.000954 0.001727
GO:0006518 peptide metabolic process 9.3% (4/43) 3.15 0.001048 0.001735
GO:0043603 amide metabolic process 9.3% (4/43) 3.13 0.001104 0.001796
GO:0005198 structural molecule activity 9.3% (4/43) 3.08 0.001257 0.002011
GO:0030554 adenyl nucleotide binding 18.6% (8/43) 1.85 0.001422 0.002237
GO:0034645 cellular macromolecule biosynthetic process 9.3% (4/43) 3.0 0.001564 0.002422
GO:0032555 purine ribonucleotide binding 18.6% (8/43) 1.77 0.002038 0.003106
GO:0032553 ribonucleotide binding 18.6% (8/43) 1.76 0.002143 0.003215
GO:0097367 carbohydrate derivative binding 18.6% (8/43) 1.74 0.002298 0.003393
GO:0017076 purine nucleotide binding 18.6% (8/43) 1.69 0.002868 0.004172
GO:1901566 organonitrogen compound biosynthetic process 9.3% (4/43) 2.65 0.003725 0.005337
GO:1901265 nucleoside phosphate binding 18.6% (8/43) 1.61 0.003967 0.00552
GO:0000166 nucleotide binding 18.6% (8/43) 1.61 0.003967 0.00552
GO:0043168 anion binding 18.6% (8/43) 1.61 0.004097 0.005619
GO:0003674 molecular_function 55.81% (24/43) 0.67 0.004243 0.005738
GO:0036094 small molecule binding 18.6% (8/43) 1.54 0.005328 0.007103
GO:0008150 biological_process 37.21% (16/43) 0.9 0.006671 0.008772
GO:0044260 cellular macromolecule metabolic process 9.3% (4/43) 2.24 0.009966 0.012929
GO:0003955 NAD(P)H dehydrogenase (quinone) activity 2.33% (1/43) 5.17 0.027406 0.03373
GO:0008137 NADH dehydrogenase (ubiquinone) activity 2.33% (1/43) 5.17 0.027406 0.03373
GO:0050136 NADH dehydrogenase (quinone) activity 2.33% (1/43) 5.17 0.027406 0.03373
GO:0003954 NADH dehydrogenase activity 2.33% (1/43) 5.17 0.027406 0.03373
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 2.33% (1/43) 4.99 0.031086 0.037775
GO:0019843 rRNA binding 2.33% (1/43) 4.88 0.033531 0.040238
GO:0003824 catalytic activity 30.23% (13/43) 0.75 0.035192 0.041709
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Abrodictyum obscurum HCCA Cluster_123 0.059 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_232 0.016 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_60 0.104 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_17 0.019 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_142 0.02 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_182 0.041 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_13 0.015 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_87 0.125 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_12 0.022 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_10 0.015 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_38 0.018 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_42 0.019 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_43 0.093 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_44 0.017 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_45 0.067 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_59 0.015 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_68 0.016 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_80 0.019 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_82 0.037 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_98 0.062 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_100 0.05 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_105 0.015 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_122 0.045 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_137 0.016 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_140 0.02 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_144 0.016 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_148 0.027 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_28 0.023 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_81 0.019 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_34 0.019 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_39 0.028 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_89 0.021 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_9 0.018 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_22 0.016 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_37 0.017 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_66 0.037 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_73 0.019 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_18 0.019 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_45 0.02 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_175 0.043 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_27 0.02 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_28 0.022 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_8 0.022 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_13 0.047 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_31 0.114 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_62 0.02 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_7 0.016 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_121 0.104 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_250 0.023 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_8 0.028 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_212 0.031 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_99 0.028 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_45 0.016 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_55 0.018 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_17 0.057 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_83 0.045 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_151 0.036 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_31 0.113 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_1 0.03 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_2 0.042 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_3 0.029 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_4 0.067 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_27 0.018 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_43 0.022 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_44 0.028 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_48 0.019 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_70 0.027 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_71 0.017 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_75 0.021 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_87 0.019 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_89 0.037 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_127 0.015 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_138 0.016 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_143 0.021 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_167 0.038 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_183 0.029 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_26 0.077 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_80 0.026 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_207 0.054 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_30 0.028 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_84 0.024 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_20 0.036 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_27 0.028 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_40 0.054 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_41 0.029 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_172 0.017 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_178 0.021 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_74 0.148 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_88 0.018 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_92 0.016 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_108 0.033 OrthoFinder output from all 47 species Compare
Sequences (43) (download table)

InterPro Domains

GO Terms

Family Terms