Coexpression cluster: Cluster_42 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 33.02% (35/106) 1.11 4e-06 0.000873
GO:0006364 rRNA processing 2.83% (3/106) 5.61 3.3e-05 0.002355
GO:0016072 rRNA metabolic process 2.83% (3/106) 5.61 3.3e-05 0.002355
GO:0016817 hydrolase activity, acting on acid anhydrides 4.72% (5/106) 3.3 0.000165 0.005951
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.72% (5/106) 3.32 0.000156 0.006734
GO:0034470 ncRNA processing 2.83% (3/106) 4.68 0.000226 0.006961
GO:0016462 pyrophosphatase activity 4.72% (5/106) 3.33 0.00015 0.008091
GO:0034660 ncRNA metabolic process 2.83% (3/106) 4.0 0.000897 0.021523
GO:0044248 cellular catabolic process 2.83% (3/106) 3.94 0.00102 0.022032
GO:0017111 ribonucleoside triphosphate phosphatase activity 3.77% (4/106) 3.14 0.001161 0.0228
GO:0016787 hydrolase activity 7.55% (8/106) 2.01 0.000891 0.024063
GO:0070037 rRNA (pseudouridine) methyltransferase activity 0.94% (1/106) 8.88 0.002124 0.025493
GO:0030289 protein phosphatase 4 complex 0.94% (1/106) 8.88 0.002124 0.025493
GO:0030674 protein-macromolecule adaptor activity 0.94% (1/106) 8.88 0.002124 0.025493
GO:0005484 SNAP receptor activity 0.94% (1/106) 8.88 0.002124 0.025493
GO:0019825 oxygen binding 0.94% (1/106) 8.88 0.002124 0.025493
GO:0006511 ubiquitin-dependent protein catabolic process 1.89% (2/106) 4.63 0.00299 0.026908
GO:0043632 modification-dependent macromolecule catabolic process 1.89% (2/106) 4.63 0.00299 0.026908
GO:0019941 modification-dependent protein catabolic process 1.89% (2/106) 4.63 0.00299 0.026908
GO:0003824 catalytic activity 15.09% (16/106) 1.12 0.00264 0.027158
GO:0006396 RNA processing 2.83% (3/106) 3.51 0.002398 0.027263
GO:0005488 binding 17.92% (19/106) 1.01 0.002549 0.027532
GO:0060090 molecular adaptor activity 0.94% (1/106) 7.88 0.004244 0.028649
GO:0031167 rRNA methylation 0.94% (1/106) 7.88 0.004244 0.028649
GO:0030490 maturation of SSU-rRNA 0.94% (1/106) 7.88 0.004244 0.028649
GO:0000154 rRNA modification 0.94% (1/106) 7.88 0.004244 0.028649
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.94% (1/106) 7.88 0.004244 0.028649
GO:0005777 peroxisome 0.94% (1/106) 7.88 0.004244 0.028649
GO:0070475 rRNA base methylation 0.94% (1/106) 7.88 0.004244 0.028649
GO:1901137 carbohydrate derivative biosynthetic process 1.89% (2/106) 4.32 0.00454 0.028845
GO:0005515 protein binding 8.49% (9/106) 1.72 0.001736 0.028851
GO:0009056 catabolic process 2.83% (3/106) 3.19 0.004489 0.029381
GO:0003924 GTPase activity 2.83% (3/106) 3.7 0.001661 0.029901
GO:0051603 proteolysis involved in protein catabolic process 1.89% (2/106) 4.21 0.005326 0.032868
GO:0008649 rRNA methyltransferase activity 0.94% (1/106) 7.29 0.00636 0.034342
GO:0140102 catalytic activity, acting on a rRNA 0.94% (1/106) 7.29 0.00636 0.034342
GO:0030515 snoRNA binding 0.94% (1/106) 7.29 0.00636 0.034342
GO:0006490 oligosaccharide-lipid intermediate biosynthetic process 0.94% (1/106) 7.29 0.00636 0.034342
GO:0006488 dolichol-linked oligosaccharide biosynthetic process 0.94% (1/106) 7.29 0.00636 0.034342
GO:0044265 cellular macromolecule catabolic process 1.89% (2/106) 4.02 0.006838 0.035169
GO:1901575 organic substance catabolic process 2.83% (3/106) 3.23 0.004097 0.035396
GO:0006629 lipid metabolic process 2.83% (3/106) 2.97 0.006785 0.035746
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum 0.94% (1/106) 6.88 0.008471 0.039776
GO:0008287 protein serine/threonine phosphatase complex 0.94% (1/106) 6.88 0.008471 0.039776
GO:0009143 nucleoside triphosphate catabolic process 0.94% (1/106) 6.88 0.008471 0.039776
GO:1903293 phosphatase complex 0.94% (1/106) 6.88 0.008471 0.039776
GO:0009057 macromolecule catabolic process 1.89% (2/106) 3.75 0.009827 0.04332
GO:0005525 GTP binding 2.83% (3/106) 2.78 0.009669 0.043508
GO:0032561 guanyl ribonucleotide binding 2.83% (3/106) 2.78 0.009669 0.043508
GO:0019001 guanyl nucleotide binding 2.83% (3/106) 2.76 0.010186 0.044005
GO:0019773 proteasome core complex, alpha-subunit complex 0.94% (1/106) 6.56 0.010577 0.044798
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Abrodictyum obscurum HCCA Cluster_28 0.015 OrthoFinder output from all 47 species Compare
Abrodictyum obscurum HCCA Cluster_144 0.022 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_316 0.02 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_25 0.015 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_43 0.015 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_53 0.017 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_283 0.019 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_297 0.015 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_303 0.023 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_20 0.02 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_5 0.02 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_48 0.022 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_41 0.016 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_207 0.016 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_59 0.017 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_102 0.015 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_161 0.018 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_165 0.015 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_46 0.016 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_5 0.016 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_147 0.02 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_149 0.016 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_33 0.021 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_88 0.016 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_150 0.02 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_98 0.024 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_67 0.022 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_83 0.016 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_110 0.017 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_17 0.015 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_26 0.019 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_54 0.017 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_73 0.023 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_84 0.02 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_277 0.016 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_291 0.015 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_129 0.023 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_188 0.016 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_48 0.016 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_24 0.015 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_96 0.016 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_35 0.017 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_15 0.023 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_28 0.02 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_140 0.016 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_92 0.017 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_65 0.019 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_71 0.016 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_2 0.015 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_4 0.022 OrthoFinder output from all 47 species Compare
Sequences (106) (download table)

InterPro Domains

GO Terms

Family Terms