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  5. Cba_g38723

Cba_g38723 (DCL4, ATDCL4)


Aliases : DCL4, ATDCL4

Description : endoribonuclease (DCL2) of transacting siRNA pathway & original description: none


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g38723

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene32280.t1 ATDCL2, DCL2,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene47448.t2 DCL1, CAF,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59762.t1 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species
Cba_g01358 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000741.30 DCL1, CAF,... No description available 0.02 OrthoFinder output from all 47 species
Dcu_g08330 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.05 OrthoFinder output from all 47 species
Ehy_g16399 ATDCL2, DCL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g10412 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008352 ATDCL3, DCL3 endoribonuclease (DCL2) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Sam_g06870 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11612 No alias endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Tin_g25551 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006935 Helicase/UvrB_N 65 234
IPR003100 PAZ_dom 893 1016
IPR001650 Helicase_C 411 526
IPR000999 RNase_III_dom 1060 1189
IPR000999 RNase_III_dom 1265 1376
IPR014720 dsRBD_dom 1403 1467
No external refs found!