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  5. Lfl_g34456

Lfl_g34456 (ATHDA18, HDA18)


Aliases : ATHDA18, HDA18

Description : class-III histone deacetylase & original description: none


Gene families : OG0004579 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004579_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g34456
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
Aob_g21962 ATHDA18, HDA18 class-III histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19445.t1 ATHDA18, HDA18,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre08.g358555 ATHDA14, hda14 Chromatin organisation.histone modifications.histone... 0.01 OrthoFinder output from all 47 species
Mp3g15180.1 ATHDA18, HDA18 class-III histone deacetylase 0.03 OrthoFinder output from all 47 species
Msp_g38693 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16983 No alias class-III histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50289 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16320 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g18745 ATHDA15, HDA15 class-III histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP HCCA
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP HCCA
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 123 381
No external refs found!