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  5. Cba_g32210

Cba_g32210 (NTMC2T1.2, SYTB,...)


Aliases : NTMC2T1.2, SYTB, SYT2, NTMC2TYPE1.2, ATSYTB

Description : membrane tethering protein (SYT1) of ER-cytoskeleton-plasmamembrane interface & original description: none


Gene families : OG0000213 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g32210

Target Alias Description ECC score Gene Family Method Actions
LOC_Os06g47130.1 NTMC2T1.3, SYT3,... endoplasmic reticulum-plasma membrane tethering protein... 0.02 OrthoFinder output from all 47 species
Len_g07405 NTMC2T1.2, SYTB,... membrane tethering protein (SYT1) of... 0.04 OrthoFinder output from all 47 species
Mp3g04720.1 NTMC2TYPE4, NTMC2T4 Synaptotagmin-4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g15829 SYT5, NTMC2T2.1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36362 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g014090.1.1 SYT5, NTMC2T2.1,... Synaptotagmin-5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc01g014370.2.1 SYT5, NTMC2T2.1,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g02695 NTMC2TYPE4, NTMC2T4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006764_P001 SYT5, NTMC2T2.1,... Synaptotagmin-5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0034227 tRNA thio-modification IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
InterPro domains Description Start Stop
IPR000008 C2_dom 415 518
IPR000008 C2_dom 262 364
IPR039010 Synaptotagmin_SMP 67 247
No external refs found!